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MG592456.1__AUR85885.1__NVP1081O_150__00150
Bact-VirMG592456.1__AUR85885.1__NVP1081O_150__00150
Identity
- Accession:
- MG592456 ↗
- Kingdom:
- phage
Quality
86.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Schizotequatrovirus›
Vibrio_phage_1.081.O._10N.286.52.C2
TaxID: 2070722
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-68
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ewkA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.64 | 56.0 | 4.85e-01 | 100.0% | 78.5% |
| 2chcC00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 51.0 | 3.99e-01 | 100.0% | 38.4% |
| 4f3lA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.63 | 55.0 | 4.60e-01 | 100.0% | 74.2% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 53.0 | 4.29e-01 | 100.0% | 49.2% |
| 3cnxA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 49.0 | 3.97e-01 | 100.0% | 42.8% |
| 3h51A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 51.0 | 4.11e-01 | 100.0% | 44.4% |
| 4o3vA00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.60 | 51.0 | 4.09e-01 | 100.0% | 47.1% |
| 3icaB00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.60 | 50.0 | 3.60e-01 | 95.5% | 79.1% |
| 2rfrA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 50.0 | 3.91e-01 | 100.0% | 42.2% |
| 2a15A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 46.0 | 3.80e-01 | 98.5% | 44.4% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.59 | 50.0 | 4.08e-01 | 100.0% | 61.3% |
| 3er7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 47.0 | 3.95e-01 | 100.0% | 49.6% |
| 5i97C00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.59 | 51.0 | 4.11e-01 | 100.0% | 53.3% |
| 1uliB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 50.0 | 3.79e-01 | 100.0% | 39.5% |
| 4kz1A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.58 | 51.0 | 4.10e-01 | 100.0% | 51.9% |
| 2cc3A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.58 | 50.0 | 4.00e-01 | 100.0% | 47.9% |
| 3gwrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 45.0 | 3.81e-01 | 100.0% | 47.2% |
| 3bioA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.58 | 36.0 | 3.07e-01 | 82.1% | 36.8% |
| 4l3aA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 37.0 | 3.51e-01 | 70.1% | 53.8% |
| 2f86B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 46.0 | 3.85e-01 | 100.0% | 48.8% |
| 5ig0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 48.0 | 3.93e-01 | 100.0% | 49.6% |
| 1of5B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 47.0 | 3.86e-01 | 100.0% | 49.2% |
| 3ff0A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 47.0 | 3.76e-01 | 98.5% | 45.4% |
| 2bi0A02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 42.0 | 3.39e-01 | 85.1% | 76.2% |
| 5jqkA03 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.55 | 47.0 | 3.12e-01 | 100.0% | 40.3% |
| 3g0kA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 39.0 | 3.31e-01 | 100.0% | 42.2% |
| 2c9jA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.54 | 46.0 | 3.34e-01 | 100.0% | 64.3% |
| 4q0yA00 | 2.60.40.4400 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 46.0 | 3.75e-01 | 98.5% | 81.7% |
| 3kztA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 39.0 | 3.22e-01 | 100.0% | 40.9% |
| 4lgqA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 45.0 | 3.69e-01 | 98.5% | 49.6% |
| 2iqiB00 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.53 | 44.0 | 3.45e-01 | 100.0% | 45.0% |
| 3w1eA02 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.53 | 44.0 | 3.41e-01 | 100.0% | 47.5% |
| 2vsmA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.53 | 41.0 | 2.60e-01 | 100.0% | 14.5% |
| 4nspA00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.53 | 40.0 | 2.88e-01 | 100.0% | 24.8% |
| 1rm6B02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.53 | 39.0 | 3.39e-01 | 100.0% | 50.5% |
| 1fm2B03 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.51 | 34.0 | 3.42e-01 | 100.0% | 66.7% |
| 2k54A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.25e-01 | 100.0% | 45.5% |
| 4n4rB00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.51 | 42.0 | 3.38e-01 | 100.0% | 82.8% |
| 3im1A03 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 42.0 | 3.63e-01 | 98.5% | 83.5% |
| 3ga2A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.51 | 40.0 | 2.86e-01 | 100.0% | 26.3% |
| 2p1jA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 44.0 | 3.53e-01 | 100.0% | 71.7% |
| 3mxqC00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 43.0 | 3.59e-01 | 100.0% | 64.8% |
| 4boeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 37.0 | 2.99e-01 | 100.0% | 36.4% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3902105 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.67 | 58.0 | 4.63e-01 | 100.0% | 61.4% |
| 3961200 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.64 | 51.0 | 4.19e-01 | 100.0% | 45.2% |
| 3836667 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.63 | 54.0 | 3.84e-01 | 100.0% | 31.1% |
| 4593266 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.63 | 39.0 | 3.82e-01 | 79.1% | 54.7% |
| 3366806 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.63 | 54.0 | 3.75e-01 | 100.0% | 28.6% |
| 3976185 | 243.1.1.55 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TraE | 0.62 | 51.0 | 3.98e-01 | 100.0% | 40.7% |
| 3364121 | 223.1.1.93 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › DUF7950 | 0.62 | 53.0 | 4.15e-01 | 98.5% | 96.7% |
| 3288819 | 243.1.1.25 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 | 0.61 | 52.0 | 4.07e-01 | 100.0% | 43.3% |
| 3927211 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.61 | 52.0 | 3.32e-01 | 94.0% | 33.3% |
| 3839915 | 243.1.1.6 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 | 0.61 | 54.0 | 4.27e-01 | 100.0% | 50.0% |
| 4149046 | 243.3.1.60 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5385 | 0.60 | 50.0 | 4.66e-01 | 100.0% | 72.2% |
| 3506845 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.60 | 51.0 | 3.57e-01 | 100.0% | 29.2% |
| 3945348 | 243.1.1.6 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 | 0.60 | 52.0 | 4.62e-01 | 100.0% | 73.0% |
| 3263321 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.60 | 51.0 | 4.09e-01 | 100.0% | 52.4% |
| 4000243 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.59 | 50.0 | 3.40e-01 | 100.0% | 23.9% |
| 4565299 | 243.1.1.6 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 | 0.59 | 52.0 | 4.10e-01 | 100.0% | 48.6% |
| 4022036 | 243.1.1.87 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_SigF | 0.59 | 50.0 | 3.72e-01 | 98.5% | 35.5% |
| 3354564 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 47.0 | 4.95e-01 | 100.0% | 96.7% |
| 3635685 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.59 | 49.0 | 3.66e-01 | 100.0% | 36.5% |
| 3622176 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.59 | 48.0 | 3.04e-01 | 100.0% | 16.7% |
| 3998281 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.58 | 48.0 | 3.48e-01 | 100.0% | 31.9% |
| 139114 | 243.1.1.1 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B | 0.58 | 50.0 | 3.73e-01 | 100.0% | 37.1% |
| 4439294 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.58 | 44.0 | 3.59e-01 | 100.0% | 43.2% |
| 6403 | 243.1.1.6 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 | 0.58 | 50.0 | 4.03e-01 | 100.0% | 49.3% |
| 5069244 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 48.0 | 4.11e-01 | 95.5% | 76.5% |
| 3504023 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.58 | 48.0 | 3.41e-01 | 100.0% | 38.4% |
| 1684828 | 243.1.1.67 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Cds6_C | 0.57 | 48.0 | 4.03e-01 | 98.5% | 52.8% |
| 3510987 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.57 | 49.0 | 3.01e-01 | 100.0% | 16.0% |
| 3650282 | 243.5.1.8 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › DUF7074 | 0.57 | 46.0 | 4.28e-01 | 98.5% | 70.8% |
| 3954034 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.57 | 37.0 | 2.72e-01 | 98.5% | 23.1% |
| 3629787 | 922.1.1.0 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat | 0.57 | 35.0 | 3.96e-01 | 77.6% | 93.3% |
| 3345394 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.56 | 47.0 | 3.69e-01 | 100.0% | 43.8% |
| 3852438 | 883.1.1.24 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF29321 | 0.56 | 45.0 | 3.40e-01 | 100.0% | 34.4% |
| 4965666 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.56 | 47.0 | 3.43e-01 | 92.5% | 83.9% |
| 4022650 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.55 | 46.0 | 3.39e-01 | 100.0% | 46.8% |
| 3964848 | 283.1.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24,Peptidase_M24_C | 0.54 | 46.0 | 3.09e-01 | 100.0% | 41.3% |
| 3931625 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.54 | 47.0 | 3.27e-01 | 97.0% | 38.7% |
| 3384215 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 44.0 | 4.37e-01 | 98.5% | 94.3% |
| 3484305 | 922.1.1.0 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat | 0.52 | 34.0 | 3.50e-01 | 77.6% | 72.3% |
| 3359635 | 274.1.1.44 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7804 | 0.52 | 43.0 | 3.78e-01 | 100.0% | 60.0% |
| 3811744 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.51 | 41.0 | 3.40e-01 | 100.0% | 46.4% |
| 3608538 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 43.0 | 3.17e-01 | 100.0% | 40.5% |