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MG592456.1__AUR85886.1__NVP1081O_151__00151

Bact-Vir

MG592456.1__AUR85886.1__NVP1081O_151__00151

Identity

Accession:
MG592456 ↗
Kingdom:
phage

Quality

76.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Schizotequatrovirus› Vibrio_phage_1.081.O._10N.286.52.C2

TaxID: 2070722

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-59
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h7lB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 49.0 3.97e-01 100.0% 41.9%
2cu3B00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.60 44.0 4.36e-01 88.1% 74.6%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 46.0 3.08e-01 89.8% 94.9%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 46.0 3.09e-01 89.8% 94.3%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 4.41e-01 86.4% 100.0%
2o14A01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.55 46.0 3.56e-01 100.0% 92.6%
5c17A00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 37.0 2.60e-01 71.2% 31.6%
3lkyA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.54 39.0 3.21e-01 79.7% 66.7%
4fmrB01 2.70.50.70 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › 0.54 47.0 3.54e-01 100.0% 68.5%
2k5iA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.54 45.0 4.16e-01 96.6% 76.9%
4oq1A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.79e-01 96.6% 91.1%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 3.55e-01 89.8% 52.0%
5jozB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.16e-01 100.0% 55.8%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 4.16e-01 83.1% 100.0%
2xetB00 2.60.40.2070 Mainly Beta › Sandwich › Immunoglobulin-like › PapC, C-terminal domain 0.52 45.0 4.00e-01 100.0% 90.9%
2xtlA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.55e-01 98.3% 94.2%
1d2oA01 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.52 42.0 3.63e-01 98.3% 71.0%
2xg5B01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.52 43.0 3.42e-01 100.0% 57.4%
2vveA01 2.60.120.770 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.77e-01 100.0% 62.4%
3fn9C04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.87e-01 100.0% 81.5%
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 41.0 3.65e-01 93.2% 73.1%
2qjvA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 3.53e-01 100.0% 51.3%
2fjlA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.31e-01 100.0% 92.7%
4aeeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.79e-01 100.0% 85.6%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 3.40e-01 100.0% 99.2%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 40.0 3.21e-01 93.2% 50.7%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 43.0 3.73e-01 98.3% 93.6%
1s6lA02 3.15.10.60 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Alkylmercury lyase 0.50 39.0 3.12e-01 88.1% 90.7%
3jzyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 42.0 3.44e-01 100.0% 92.7%
2j5wA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.50 42.0 3.24e-01 100.0% 90.0%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036140 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.74 55.0 5.18e-01 100.0% 67.1%
3290124 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.63 45.0 3.72e-01 100.0% 40.0%
3621494 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 51.0 4.07e-01 100.0% 81.6%
3246388 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 50.0 4.07e-01 100.0% 88.2%
5034351 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 44.0 4.58e-01 84.7% 100.0%
3796900 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 45.0 3.60e-01 88.1% 73.9%
3551326 10.32.1.42 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PINIT 0.56 48.0 3.63e-01 100.0% 89.0%
3654226 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 48.0 3.89e-01 100.0% 96.7%
4405290 10.32.1.44 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM-like 0.56 49.0 3.52e-01 100.0% 96.0%
3932770 11.1.4.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 0.55 46.0 3.81e-01 94.9% 90.9%
3401623 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 46.0 3.19e-01 98.3% 60.9%
5063433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 40.0 4.17e-01 84.7% 96.0%
3509963 11.1.1.430 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP-delta 0.54 42.0 3.76e-01 88.1% 85.6%
3991097 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.67e-01 100.0% 82.4%
3414969 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 44.0 3.37e-01 91.5% 95.0%
3265744 10.2.1.55 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.54 45.0 4.04e-01 98.3% 94.4%
3276503 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.60e-01 89.8% 66.7%
5052269 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 44.0 3.81e-01 100.0% 93.3%
3297865 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 42.0 3.40e-01 89.8% 81.6%
3513769 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.54 41.0 3.88e-01 88.1% 76.0%
3715220 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 45.0 3.32e-01 98.3% 72.1%
4668792 10.2.1.55 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.53 44.0 3.80e-01 98.3% 84.0%
4147290 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.53 40.0 3.98e-01 96.6% 76.9%
5036621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 40.0 4.14e-01 89.8% 100.0%
3477113 11.2.1.24 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › SPATA6 0.53 45.0 3.43e-01 98.3% 93.1%
5083796 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.52e-01 98.3% 54.4%
3313202 220.1.1.181 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_ULP 0.52 44.0 3.53e-01 100.0% 78.5%
4164556 10.2.1.55 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.52 43.0 3.76e-01 98.3% 84.0%
3592720 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 45.0 2.86e-01 100.0% 37.2%
3215466 11.2.1.25 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 0.52 44.0 3.64e-01 98.3% 89.6%
3513164 11.2.1.25 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 0.52 44.0 3.53e-01 100.0% 89.6%
3511921 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.52 38.0 3.84e-01 98.3% 80.0%
3498772 11.2.1.24 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › SPATA6 0.52 43.0 3.40e-01 100.0% 99.3%
5011920 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.55e-01 83.1% 100.0%
4147366 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.51 37.0 3.89e-01 86.4% 100.0%
5030430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.87e-01 88.1% 95.4%
D2 medium residues 60-119
PDB
Domain cluster: rep: NC_019401.1__YP_006987205.1__GAP32_102__00103__D74-136
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.81 73.0 5.33e-01 100.0% 45.9%
1rwrA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 70.0 4.42e-01 98.3% 24.2%
4kh3A00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.76 66.0 3.87e-01 100.0% 17.9%
3jx8A00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.74 64.0 4.24e-01 98.3% 27.5%
3zppA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.72 62.0 3.77e-01 100.0% 32.8%
2j8zA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 52.0 4.02e-01 93.3% 85.4%
4hy3A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 51.0 3.75e-01 98.3% 63.0%
2cf5A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 49.0 3.76e-01 93.3% 74.5%
2h6eA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 49.0 3.87e-01 96.7% 85.3%
2rc5A02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.59 43.0 3.23e-01 80.0% 46.6%
3ftdA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 44.0 3.23e-01 100.0% 41.8%
4tkzA00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.51 41.0 3.28e-01 93.3% 67.7%
5v8sA02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.50 39.0 3.11e-01 93.3% 81.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5041137 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.85 76.0 7.15e-01 95.0% 91.4%
4406918 207.6.1.16 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › FARP 0.85 78.0 5.92e-01 100.0% 50.0%
4020264 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.83 77.0 6.25e-01 100.0% 79.0%
3707216 208.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain 0.83 76.0 5.03e-01 100.0% 31.4%
3596944 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.82 74.0 5.40e-01 100.0% 47.1%
3945380 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.81 74.0 6.14e-01 100.0% 78.0%
4378528 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.81 74.0 6.13e-01 100.0% 78.0%
3997590 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.78 66.0 6.62e-01 91.7% 100.0%
2516583 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.78 67.0 5.86e-01 96.7% 85.6%
3963707 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.77 66.0 6.02e-01 98.3% 72.5%
3629898 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.76 64.0 6.00e-01 93.3% 100.0%
4818375 312.1.1.0 ↗ a+b three layers › HIT-like › HIT-related › HIT-related 0.74 63.0 5.06e-01 98.3% 80.5%
3769689 207.14.1.3 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › DUF5585 0.72 65.0 6.00e-01 100.0% 88.0%
3572525 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.72 62.0 5.73e-01 100.0% 90.0%
3870521 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.64 46.0 4.36e-01 78.3% 100.0%
3803729 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.60 48.0 4.72e-01 95.0% 86.2%
3708280 207.3.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Insect cysteine-rich antifreeze protein › Insect cysteine-rich antifreeze protein 0.59 51.0 4.62e-01 100.0% 80.0%
3605824 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 38.0 3.14e-01 73.3% 79.1%