←Back to structures

MG592456.1__AUR85908.1__NVP1081O_173__00173

Bact-Vir

MG592456.1__AUR85908.1__NVP1081O_173__00173

Identity

Accession:
MG592456 ↗
Kingdom:
phage

Quality

92.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Schizotequatrovirus› Vibrio_phage_1.081.O._10N.286.52.C2

TaxID: 2070722

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-63
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 45.0 3.69e-01 75.8% 45.5%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 40.0 3.40e-01 75.8% 38.7%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.62 44.0 3.23e-01 75.8% 31.2%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.61 43.0 4.00e-01 77.4% 98.8%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 41.0 3.40e-01 74.2% 53.1%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.58 42.0 3.25e-01 77.4% 36.7%
7ui8A01 2.60.40.3930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 40.0 3.47e-01 74.2% 57.8%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.58 40.0 3.46e-01 75.8% 92.7%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 48.0 3.40e-01 96.8% 55.9%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 47.0 3.71e-01 96.8% 69.2%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.57 42.0 3.04e-01 82.3% 40.9%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 40.0 4.05e-01 75.8% 77.4%
3omzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.46e-01 75.8% 64.7%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 40.0 3.08e-01 75.8% 35.7%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 46.0 3.60e-01 96.8% 62.9%
4g5aA00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 38.0 3.29e-01 72.6% 47.5%
3zghA00 2.60.40.3400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 38.0 2.80e-01 72.6% 30.5%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 46.0 3.76e-01 96.8% 73.6%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 38.0 3.18e-01 74.2% 50.4%
2pn5A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.55 38.0 3.34e-01 74.2% 50.5%
1lktA00 2.170.14.10 Mainly Beta › Beta Complex › Tailspike Protein; Chain › Phage P22 tailspike-like, N-terminal domain 0.55 38.0 3.35e-01 75.8% 68.3%
2xqxA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 38.0 2.95e-01 74.2% 32.0%
1etb200 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.55 38.0 3.20e-01 75.8% 42.7%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 46.0 3.53e-01 100.0% 66.0%
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 45.0 3.34e-01 100.0% 94.1%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 44.0 3.53e-01 95.2% 67.6%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 38.0 2.97e-01 75.8% 32.6%
6kxkG01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 39.0 3.22e-01 82.3% 48.9%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.69e-01 74.2% 97.1%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 37.0 3.22e-01 74.2% 70.5%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 42.0 3.31e-01 91.9% 64.4%
2m2dA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.09e-01 74.2% 55.9%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.53 36.0 3.28e-01 75.8% 49.5%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.53 40.0 3.62e-01 85.5% 94.6%
2w5fB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 38.0 2.92e-01 77.4% 35.5%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 43.0 3.45e-01 96.8% 74.8%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 36.0 3.42e-01 74.2% 67.1%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 3.24e-01 96.8% 59.5%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 38.0 2.90e-01 80.6% 32.7%
1o5lA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 36.0 2.94e-01 75.8% 37.2%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.15e-01 71.0% 61.3%
2wb7A02 2.60.40.2050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 2.75e-01 74.2% 34.2%
3rpiB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.09e-01 72.6% 62.2%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.29e-01 91.9% 63.7%
3zgzD04 2.20.28.290 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.50 37.0 3.74e-01 80.6% 95.2%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3402045 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.67 47.0 3.96e-01 74.2% 77.1%
3956820 10.32.1.269 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27503 0.65 46.0 3.75e-01 74.2% 59.1%
3743938 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 45.0 3.59e-01 74.2% 60.8%
4941989 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 45.0 3.92e-01 75.8% 58.9%
3656483 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 44.0 3.37e-01 75.8% 43.6%
3213748 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 42.0 3.49e-01 74.2% 40.0%
3241333 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 42.0 3.63e-01 74.2% 46.0%
3210917 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 42.0 3.84e-01 79.0% 54.1%
3961371 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.60 47.0 4.36e-01 87.1% 85.0%
4477564 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 43.0 4.01e-01 77.4% 61.5%
3284021 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 43.0 3.63e-01 79.0% 68.2%
3529236 11.1.1.229 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IRK_C 0.59 41.0 3.09e-01 75.8% 40.6%
5068294 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 34.0 3.28e-01 72.6% 48.6%
3950388 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 48.0 3.71e-01 96.8% 66.9%
3239601 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.57 41.0 3.32e-01 77.4% 49.6%
3205720 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 3.24e-01 77.4% 51.9%
3282756 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.55 46.0 3.64e-01 95.2% 70.4%
4355799 223.1.1.26 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_3 0.55 39.0 2.86e-01 75.8% 49.7%
4999024 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.55 45.0 3.30e-01 96.8% 71.5%
3719860 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 43.0 3.66e-01 91.9% 67.8%
3518700 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.55 45.0 3.26e-01 98.4% 88.6%
3488745 11.1.1.805 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 0.54 39.0 3.30e-01 77.4% 60.9%
5038686 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.54 38.0 3.10e-01 74.2% 49.6%
5014955 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 37.0 3.11e-01 74.2% 44.2%
3056322 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.54 38.0 3.26e-01 77.4% 68.2%
3237567 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 38.0 3.98e-01 77.4% 87.3%
3408651 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.53 34.0 3.06e-01 75.8% 44.4%
4993709 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 2.81e-01 77.4% 54.3%
4648475 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.53 43.0 4.39e-01 100.0% 96.7%
3899364 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.13e-01 75.8% 59.1%
3214839 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 36.0 2.80e-01 74.2% 48.8%
2814155 886.1.1.1 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › SOUL 0.52 36.0 2.68e-01 75.8% 51.9%
4500974 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.52 42.0 3.45e-01 91.9% 58.3%
3956579 11.1.1.949 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28476 0.51 35.0 2.91e-01 77.4% 46.7%
3398695 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 40.0 2.86e-01 91.9% 45.7%
3609893 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.08e-01 77.4% 50.0%
4658432 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 40.0 3.22e-01 91.9% 67.4%
4600663 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.50 40.0 2.74e-01 85.5% 50.0%