←Back to structures

MG592456.1__AUR85975.1__NVP1081O_240__00240

Bact-Vir

MG592456.1__AUR85975.1__NVP1081O_240__00240

Identity

Accession:
MG592456 ↗
Kingdom:
phage

Quality

74.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Schizotequatrovirus› Vibrio_phage_1.081.O._10N.286.52.C2

TaxID: 2070722

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-67
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rv0B03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 49.0 4.52e-01 79.0% 73.4%
1fm2B01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.65 52.0 3.45e-01 90.3% 84.4%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.63 50.0 3.40e-01 87.1% 31.1%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 43.0 3.68e-01 74.2% 49.5%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.61 46.0 2.81e-01 100.0% 12.6%
2qzbA00 2.60.460.10 Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain 0.61 47.0 3.60e-01 83.9% 37.9%
3clwC01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 36.0 3.06e-01 100.0% 36.0%
3bgtA01 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.60 46.0 3.14e-01 83.9% 84.4%
1bquA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 41.0 3.50e-01 100.0% 42.6%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 51.0 4.56e-01 100.0% 92.2%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 44.0 3.01e-01 90.3% 40.9%
3jclA01 2.60.120.960 Mainly Beta › Sandwich › Jelly Rolls › Spike glycoprotein, N-terminal domain 0.57 48.0 3.22e-01 100.0% 51.6%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.57 40.0 3.70e-01 75.8% 58.3%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 43.0 4.35e-01 85.5% 82.3%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 45.0 3.23e-01 88.7% 54.4%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 41.0 4.25e-01 87.1% 87.5%
6grqA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.59e-01 100.0% 50.5%
3b4nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.80e-01 82.3% 95.5%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 43.0 4.32e-01 90.3% 84.4%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.56 48.0 4.19e-01 98.4% 100.0%
5e55B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.65e-01 80.6% 97.8%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 40.0 2.61e-01 83.9% 15.4%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.54 41.0 3.57e-01 85.5% 81.4%
1aj6A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.54 41.0 3.04e-01 88.7% 82.5%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.95e-01 93.5% 81.4%
2d8iA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 39.0 3.50e-01 79.0% 83.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.12e-01 100.0% 88.7%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 40.0 3.00e-01 85.5% 72.2%
1pqzA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 42.0 3.37e-01 91.9% 69.3%
4epcA01 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.52 44.0 4.14e-01 100.0% 87.7%
4g41A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.52 33.0 2.30e-01 77.4% 17.4%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 42.0 2.93e-01 100.0% 91.4%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.85e-01 95.2% 84.9%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 43.0 4.37e-01 98.4% 100.0%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 37.0 3.15e-01 82.3% 90.4%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 39.0 2.98e-01 100.0% 34.6%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
224047 6043.1.1.3 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N 0.78 42.0 4.13e-01 87.1% 50.0%
1157731 6043.1.1.3 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N 0.78 42.0 3.85e-01 87.1% 41.8%
3281300 4.1.1.426 ↗ beta barrels › SH3 › SH3 › SH3 › PF31188 0.75 65.0 6.44e-01 95.2% 96.9%
4505316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 58.0 5.89e-01 100.0% 86.7%
5069282 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.70 42.0 3.61e-01 82.3% 37.0%
3289978 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.69 54.0 4.13e-01 85.5% 70.3%
3879945 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 53.0 5.41e-01 82.3% 96.7%
4993189 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 46.0 4.72e-01 85.5% 75.0%
3900635 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.67 43.0 4.27e-01 100.0% 63.1%
5032865 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.66 39.0 3.35e-01 82.3% 37.2%
3436416 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.66 46.0 3.89e-01 74.2% 63.8%
3959240 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.66 52.0 4.17e-01 87.1% 71.2%
3643307 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.65 45.0 3.59e-01 72.6% 52.8%
5012226 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 58.0 4.10e-01 100.0% 70.0%
3333293 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.64 50.0 4.71e-01 91.9% 69.3%
3913354 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 48.0 4.25e-01 80.6% 91.1%
3435691 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.64 46.0 4.61e-01 77.4% 84.6%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 49.0 4.95e-01 100.0% 84.1%
2392884 227.1.1.14 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › gp45-slide_C 0.63 50.0 4.03e-01 87.1% 59.2%
5021156 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 44.0 3.09e-01 100.0% 23.0%
4082107 7089.1.1.3 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › MmoD 0.63 44.0 4.29e-01 98.4% 65.7%
3828316 220.1.1.205 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PHS1 0.63 56.0 4.23e-01 100.0% 78.6%
3926618 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.62 44.0 3.56e-01 74.2% 55.8%
4029169 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.62 46.0 2.69e-01 79.0% 75.6%
4502430 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.61 48.0 4.07e-01 85.5% 78.1%
4144852 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.61 50.0 4.26e-01 93.5% 93.5%
3705153 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 50.0 3.99e-01 93.5% 83.7%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.34e-01 100.0% 63.5%
3717506 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 45.0 2.87e-01 82.3% 19.6%
3615641 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 48.0 4.39e-01 90.3% 67.1%
3959843 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.59 47.0 3.21e-01 90.3% 69.2%
5032518 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 50.0 4.40e-01 100.0% 83.2%
4241924 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.58 46.0 4.11e-01 100.0% 61.1%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 44.0 3.97e-01 100.0% 58.9%
4243201 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 50.0 3.63e-01 100.0% 59.5%
3179206 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 46.0 4.27e-01 93.5% 69.6%
1760289 809.1.1.3 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF3862 0.57 40.0 3.70e-01 75.8% 58.3%
3941130 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.57 45.0 2.90e-01 91.9% 27.3%
4034031 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.56 45.0 4.49e-01 90.3% 86.2%
3591998 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.56 47.0 4.00e-01 100.0% 67.3%
185702 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.55 44.0 3.37e-01 93.5% 69.8%
4039170 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.55 46.0 3.06e-01 91.9% 79.2%
3192402 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 3.59e-01 100.0% 54.1%
4161673 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.54 40.0 3.71e-01 98.4% 60.0%
3610752 511.1.1.1 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.54 42.0 2.63e-01 90.3% 25.6%
3837995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.96e-01 98.4% 87.3%
3401269 10.1.1.5 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.53 48.0 3.15e-01 100.0% 54.8%
3212138 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.53 42.0 3.95e-01 87.1% 74.7%
3974426 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.53 46.0 4.18e-01 100.0% 85.9%
3008893 7063.1.1.1 ↗ a/b three-layered sandwiches › C-terminal domain of poxin › C-terminal domain of poxin › C-terminal domain of poxin › Baculo_p26 0.52 42.0 3.76e-01 87.1% 92.9%
4851691 10.1.1.39 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › bCoV_S1_N 0.52 39.0 2.98e-01 87.1% 47.4%
5071741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 4.27e-01 95.2% 95.0%
4964148 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 40.0 3.36e-01 90.3% 89.2%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 44.0 3.88e-01 100.0% 84.2%
3972316 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.51 34.0 3.36e-01 80.6% 64.6%
3592277 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 45.0 3.23e-01 100.0% 55.7%
4213326 4.1.1.86 ↗ beta barrels › SH3 › SH3 › SH3 › GW 0.51 43.0 4.05e-01 100.0% 88.7%
536 4.1.1.86 ↗ beta barrels › SH3 › SH3 › SH3 › GW 0.51 42.0 3.85e-01 95.2% 84.9%
3709800 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 39.0 3.50e-01 88.7% 58.9%
3492960 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.51 44.0 3.29e-01 100.0% 77.0%
4054649 4.1.1.86 ↗ beta barrels › SH3 › SH3 › SH3 › GW 0.50 41.0 3.95e-01 96.8% 97.3%