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MG592456.1__AUR85990.1__NVP1081O_255__00255

Bact-Vir

MG592456.1__AUR85990.1__NVP1081O_255__00255

Identity

Accession:
MG592456 ↗
Kingdom:
phage

Quality

92.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Schizotequatrovirus› Vibrio_phage_1.081.O._10N.286.52.C2

TaxID: 2070722

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-189
PDB
Domain cluster: rep: OQ988004.1__WKV22171.1__8UZL_00053__00053__D13-201
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06508.20 best QueC 123.1 1.60e-35 100.0% 95.7%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pg3A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.81 79.0 7.38e-01 100.0% 89.1%
4nzpA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.78 54.0 6.34e-01 94.1% 97.1%
3a2kA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.77 47.0 5.53e-01 73.4% 85.2%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.72 64.0 5.70e-01 100.0% 68.4%
3k32B00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.71 66.0 6.53e-01 98.9% 93.9%
4xfjB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.71 61.0 6.42e-01 98.4% 98.3%
3gdgA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 50.0 4.46e-01 82.4% 83.5%
3t4xA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 49.0 4.35e-01 83.0% 86.8%
3pvzB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 47.0 4.03e-01 83.0% 64.0%
4l4xA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 46.0 3.41e-01 83.0% 39.4%
3cb2B01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.59 47.0 4.17e-01 83.5% 87.2%
7zllA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.58 50.0 4.39e-01 92.0% 99.6%
2zejB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 29.0 3.82e-01 83.0% 88.1%
3huuC02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 37.0 4.27e-01 77.1% 91.7%
1qydA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 44.0 4.45e-01 83.0% 82.7%
3nhvC01 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.55 31.0 3.76e-01 85.6% 84.2%
3ctpA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 38.0 4.35e-01 73.4% 94.9%
4evqA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 43.0 4.63e-01 90.4% 96.8%
4q6bA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 36.0 4.15e-01 77.7% 91.8%
2d5lA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 39.0 3.56e-01 73.4% 81.8%
4bgvA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 40.0 4.46e-01 76.1% 98.0%
1nv8A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 40.0 3.98e-01 76.6% 86.8%
1orvA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 38.0 3.50e-01 73.4% 81.0%
3c4aA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 39.0 3.72e-01 83.0% 64.8%
1ceqA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 37.0 4.25e-01 73.9% 97.8%
5kzkA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.53 34.0 3.72e-01 91.5% 76.3%
6r8gA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 39.0 4.37e-01 76.1% 99.3%
5fbhA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 42.0 4.24e-01 81.9% 88.8%
3lkbA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 44.0 4.68e-01 88.8% 99.4%
6ejiA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 43.0 4.34e-01 84.0% 89.7%
2wojC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 3.80e-01 86.7% 85.2%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 38.0 3.35e-01 73.4% 76.9%
1yzhB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 42.0 4.07e-01 100.0% 78.2%
4fzvA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 46.0 4.34e-01 95.7% 95.6%
4zi5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 4.05e-01 89.9% 79.9%
4amuA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.51 37.0 3.91e-01 73.9% 97.0%
1yh0A02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.51 39.0 4.05e-01 78.7% 88.3%
2d4aD01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 37.0 4.19e-01 76.1% 100.0%
4xymC03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.51 38.0 4.04e-01 81.4% 87.0%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4192836 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.92 90.0 8.17e-01 100.0% 92.3%
None — 0.92 90.0 8.48e-01 100.0% 92.6%
None — 0.92 90.0 8.33e-01 100.0% 91.5%
4075676 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.92 89.0 7.88e-01 100.0% 85.4%
None — 0.92 89.0 8.28e-01 100.0% 91.6%
None — 0.92 89.0 8.27e-01 100.0% 91.1%
4338016 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.92 89.0 8.19e-01 100.0% 87.8%
4443198 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.91 89.0 8.09e-01 100.0% 92.7%
4125125 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.91 89.0 8.49e-01 100.0% 97.6%
None — 0.91 89.0 8.31e-01 100.0% 93.2%
4241012 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.91 89.0 8.24e-01 100.0% 91.5%
None — 0.91 89.0 8.37e-01 100.0% 95.3%
None — 0.91 88.0 8.10e-01 100.0% 92.2%
4538553 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.91 88.0 8.35e-01 100.0% 95.3%
4601377 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.91 88.0 8.17e-01 100.0% 91.1%
None — 0.90 87.0 7.95e-01 100.0% 94.0%
None — 0.90 88.0 8.13e-01 100.0% 91.6%
4098108 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.90 87.0 8.11e-01 100.0% 92.0%
4037820 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.90 87.0 8.27e-01 100.0% 91.6%
4991573 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.90 87.0 8.09e-01 100.0% 90.7%
4930592 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.90 87.0 8.15e-01 100.0% 93.6%
None — 0.88 86.0 8.20e-01 100.0% 95.7%
4172759 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.88 83.0 8.25e-01 100.0% 93.8%
None — 0.88 85.0 7.99e-01 100.0% 92.7%
4929749 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.86 83.0 7.90e-01 100.0% 92.6%
3385824 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.76 47.0 5.79e-01 99.5% 96.7%
4596498 2005.1.1.20 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ThiI 0.75 67.0 6.27e-01 96.3% 78.2%
3838008 2005.1.1.23 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA_Me_trans 0.73 66.0 5.88e-01 94.1% 88.0%
None — 0.72 64.0 6.24e-01 97.3% 86.5%
4936852 2005.1.1.70 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DUF7411 0.71 67.0 6.60e-01 98.9% 94.5%
None — 0.71 63.0 5.81e-01 100.0% 74.5%
4386055 2005.1.1.47 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans 0.71 65.0 5.74e-01 100.0% 70.2%
4078594 2005.1.1.8 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Arginosuc_synth 0.71 62.0 6.27e-01 98.4% 92.4%
4253395 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.70 64.0 5.76e-01 100.0% 71.9%
4881378 2005.1.1.22 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueH 0.70 62.0 6.43e-01 96.3% 98.9%
5036187 2005.1.1.8 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Arginosuc_synth 0.70 66.0 6.51e-01 100.0% 94.9%
4180687 2005.1.1.23 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA_Me_trans 0.69 63.0 6.06e-01 95.7% 91.4%
None — 0.69 64.0 6.34e-01 96.8% 94.9%
4082908 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.69 62.0 6.07e-01 100.0% 88.0%
4589597 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.69 59.0 4.75e-01 90.4% 68.5%
None — 0.68 62.0 6.07e-01 95.7% 91.2%
5035814 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.68 65.0 5.49e-01 100.0% 65.9%
4943565 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.67 64.0 5.62e-01 100.0% 76.6%
3386240 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.66 62.0 5.40e-01 99.5% 75.6%
5057523 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.66 56.0 4.28e-01 89.4% 72.9%
5028683 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.66 56.0 4.42e-01 89.9% 70.4%
4203886 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.66 62.0 5.46e-01 100.0% 70.9%
4965730 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.65 43.0 5.13e-01 98.4% 95.4%
4351211 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.65 62.0 5.43e-01 100.0% 70.9%
4425942 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.65 62.0 5.22e-01 100.0% 63.7%
5029640 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.64 58.0 5.53e-01 95.7% 86.5%
3697184 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.64 51.0 4.39e-01 83.5% 73.8%
4963305 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.62 41.0 4.85e-01 98.4% 95.5%
5081773 301.1.1.5 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › SpoU_sub_bind 0.57 25.0 3.76e-01 74.5% 98.7%
3962350 301.1.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like 0.57 23.0 3.70e-01 73.4% 100.0%
4602018 2003.1.1.76 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SDH_C 0.57 43.0 4.23e-01 82.4% 73.0%
4998809 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.57 40.0 4.09e-01 83.0% 73.5%
3514216 2003.1.1.26 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Glyco_hydro_4 0.55 40.0 4.13e-01 75.5% 92.8%
4529444 2003.1.1.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Ldh_1_N 0.55 40.0 4.35e-01 76.1% 91.0%
3590839 7537.1.1.1 ↗ a/b three-layered sandwiches › PTS IIb component › PTS IIb component › PTS IIb component › PTSIIB_sorb 0.54 41.0 4.30e-01 80.9% 87.6%
4995335 2488.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › DUF2122 0.52 39.0 4.32e-01 83.0% 94.8%
5023632 2488.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › DUF2122 0.52 39.0 4.29e-01 83.0% 94.2%
3735346 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 41.0 3.90e-01 80.9% 73.0%
4591667 2003.1.1.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Ldh_1_N 0.51 37.0 4.14e-01 75.5% 99.3%
4276439 2004.1.1.429 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.51 40.0 3.24e-01 82.4% 98.9%
3789521 2003.1.1.48 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › YjeF_N 0.51 39.0 3.44e-01 79.3% 84.6%