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MG592456.1__AUR86006.1__NVP1081O_271__00271

Bact-Vir

MG592456.1__AUR86006.1__NVP1081O_271__00271

Identity

Accession:
MG592456 ↗
Kingdom:
phage

Quality

79.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 37-91
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4atnA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 60.0 4.17e-01 100.0% 78.0%
2n8lA00 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.67 59.0 4.06e-01 100.0% 35.6%
3bzbB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 57.0 3.91e-01 100.0% 42.5%
3g2mA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 59.0 4.17e-01 100.0% 89.1%
1g8aA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 57.0 4.04e-01 100.0% 85.8%
4fvmA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 53.0 4.36e-01 90.9% 62.1%
2joqA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 52.0 4.75e-01 92.7% 66.7%
4qdjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 55.0 3.76e-01 100.0% 69.7%
3mebA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.64 55.0 3.53e-01 100.0% 62.4%
2cmgA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 54.0 3.73e-01 100.0% 67.3%
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.64 55.0 4.22e-01 100.0% 48.5%
3ktwB00 3.30.56.30 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit 0.63 53.0 4.54e-01 96.4% 75.3%
1dt4A00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.63 54.0 4.98e-01 98.2% 78.1%
3ba3B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 55.0 4.06e-01 100.0% 86.0%
1j27A00 3.30.70.1120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like 0.62 51.0 4.37e-01 98.2% 57.1%
3lcvB02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 52.0 3.59e-01 98.2% 69.3%
5b08A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 51.0 4.31e-01 98.2% 61.0%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.61 52.0 4.07e-01 100.0% 47.7%
2ywwA01 3.30.70.140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain 0.61 50.0 4.27e-01 96.4% 56.0%
1we8A01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.60 50.0 4.48e-01 98.2% 66.7%
1nbeB01 3.30.70.140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain 0.60 49.0 4.21e-01 96.4% 55.9%
1vk3A04 3.30.70.1670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formylglycinamide ribonucleotide amidotransferase, C-terminal domain 0.60 49.0 4.18e-01 94.5% 76.0%
2jzxA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.60 52.0 4.65e-01 98.2% 73.4%
2c47A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 50.0 4.62e-01 98.2% 72.6%
3fzgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 49.0 3.46e-01 100.0% 41.3%
2qmxA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 46.0 4.06e-01 98.2% 100.0%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.57 47.0 3.39e-01 98.2% 30.9%
5bk7H01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 48.0 3.77e-01 100.0% 60.5%
2ctjA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.56 45.0 3.95e-01 100.0% 58.9%
2x1wL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 3.87e-01 100.0% 56.2%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 3.81e-01 98.2% 61.5%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.53 42.0 3.35e-01 100.0% 58.0%
1yx0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 45.0 3.37e-01 100.0% 55.6%
1kvnA00 3.30.56.30 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit 0.52 43.0 3.61e-01 98.2% 67.3%
3g3sA01 3.40.630.110 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › GNAT acetyltransferase-like 0.52 42.0 3.40e-01 94.5% 57.8%
2ctlA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 41.0 3.64e-01 100.0% 62.9%
3kd4A01 2.60.40.3140 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 3.02e-01 100.0% 33.7%
1cjwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 42.0 3.17e-01 100.0% 48.2%
4ponA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 3.07e-01 98.2% 90.1%
2w3xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 42.0 3.23e-01 100.0% 57.6%
3so5A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.45e-01 100.0% 57.1%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4678670 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.74 58.0 5.13e-01 100.0% 58.7%
3765777 320.1.1.14 a+b two layers › R3H domain-like › R3H domain › R3H domain › KCTD_C 0.70 62.0 4.76e-01 100.0% 69.6%
4930625 2.1.1.95 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Lig_C 0.69 60.0 4.56e-01 100.0% 44.4%
3620481 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.68 58.0 5.09e-01 98.2% 64.7%
5079265 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.67 58.0 3.89e-01 100.0% 69.8%
3487955 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.67 53.0 4.70e-01 92.7% 60.0%
3756621 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.66 56.0 4.96e-01 94.5% 68.8%
5057183 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.66 57.0 4.81e-01 100.0% 57.9%
3257261 4081.1.1.7 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I 0.66 54.0 3.77e-01 100.0% 27.6%
3798234 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.66 56.0 4.63e-01 96.4% 57.0%
3628199 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.66 56.0 4.63e-01 96.4% 57.0%
4997480 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.66 54.0 3.70e-01 90.9% 28.6%
3177874 327.11.2.19 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_11 0.66 54.0 3.87e-01 98.2% 30.9%
4944481 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.65 56.0 4.09e-01 100.0% 41.2%
4934178 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.65 54.0 4.20e-01 96.4% 56.2%
3886540 304.151.1.5 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › JAG1 0.65 53.0 4.07e-01 96.4% 45.7%
3924671 304.8.1.71 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7636 0.65 52.0 4.38e-01 92.7% 57.0%
3895696 304.151.1.5 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › JAG1 0.65 55.0 4.45e-01 98.2% 59.1%
4958097 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.64 53.0 4.55e-01 92.7% 56.7%
3858557 304.159.1.4 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › JAG1 0.64 55.0 4.40e-01 100.0% 57.4%
3647133 2003.1.5.115 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 0.64 55.0 3.40e-01 100.0% 41.7%
3540722 304.44.1.5 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › JAG1 0.64 54.0 4.36e-01 100.0% 57.4%
3726519 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.64 54.0 4.82e-01 98.2% 68.8%
5044265 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.63 53.0 3.98e-01 96.4% 49.7%
3485088 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.63 55.0 4.34e-01 100.0% 60.0%
5065076 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.63 49.0 3.58e-01 89.1% 43.2%
5014008 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 50.0 4.82e-01 98.2% 76.9%
4943087 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.63 50.0 4.69e-01 98.2% 70.0%
3443064 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.63 50.0 4.09e-01 100.0% 44.3%
3671807 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.63 50.0 4.52e-01 100.0% 63.7%
5931 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.63 50.0 4.18e-01 92.7% 51.9%
3326172 2003.1.5.115 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 0.63 54.0 3.73e-01 100.0% 68.7%
4177166 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.63 54.0 4.62e-01 98.2% 62.2%
3920144 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.63 54.0 4.50e-01 100.0% 63.0%
4252405 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.62 52.0 4.48e-01 96.4% 60.0%
3911484 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.62 53.0 4.67e-01 98.2% 65.9%
3196489 328.7.1.1 a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.62 53.0 4.33e-01 100.0% 53.6%
4017873 327.11.2.40 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF31052 0.61 49.0 4.49e-01 89.1% 69.9%
3838247 2002.1.1.36 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.61 47.0 2.85e-01 92.7% 12.5%
4934117 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 51.0 4.54e-01 100.0% 67.1%
5065498 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.61 49.0 3.51e-01 94.5% 39.5%
1291611 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.61 49.0 4.39e-01 96.4% 61.6%
3686581 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.61 52.0 4.69e-01 98.2% 70.7%
4934562 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.61 51.0 4.61e-01 98.2% 68.8%
3806326 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.60 50.0 4.17e-01 98.2% 52.4%
3499589 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.60 49.0 4.22e-01 100.0% 65.0%
3234180 327.11.2.10 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH-I_CeGLD3_rpt3 0.60 52.0 4.60e-01 98.2% 76.2%
4527439 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 50.0 3.87e-01 98.2% 42.4%
3819163 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 50.0 4.06e-01 98.2% 50.0%
3646000 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 50.0 3.91e-01 98.2% 44.0%
1945647 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.59 47.0 4.12e-01 98.2% 58.8%
3587824 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.58 49.0 4.57e-01 98.2% 78.6%
3472003 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 3.77e-01 96.4% 55.4%
1066173 304.6.1.2 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › ALO 0.58 47.0 3.98e-01 98.2% 52.0%
4030644 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.58 47.0 4.33e-01 100.0% 76.2%
3275339 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 48.0 3.37e-01 100.0% 43.6%
3941464 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 47.0 3.51e-01 100.0% 51.9%
4977300 871.1.1.0 a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) 0.56 46.0 3.59e-01 100.0% 40.0%
4002327 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.55 45.0 3.85e-01 100.0% 60.0%
5005527 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.55 46.0 4.04e-01 100.0% 77.8%
3397502 4012.4.1.0 a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain 0.54 37.0 4.18e-01 90.9% 100.0%
4014354 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.53 44.0 2.93e-01 98.2% 21.6%
3548774 4012.4.1.1 a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain › DPAGT1_ins 0.52 39.0 4.15e-01 96.4% 100.0%
3267332 7026.1.1.0 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.52 43.0 2.99e-01 100.0% 38.2%
152644 222.1.1.16 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl-ACP_TE_C 0.51 41.0 3.50e-01 96.4% 64.4%
4015496 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 43.0 3.93e-01 98.2% 78.7%
4504560 2003.1.5.35 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM 0.51 42.0 2.71e-01 100.0% 71.9%
3971452 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 40.0 3.46e-01 100.0% 86.7%
4444108 222.1.1.8 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 0.51 38.0 2.52e-01 87.3% 76.4%