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MG592458.1__AUR86202.1__NVP1083O_56__00056

Bact-Vir

MG592458.1__AUR86202.1__NVP1083O_56__00056

Identity

Accession:
MG592458 ↗
Kingdom:
phage

Quality

77.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.083.O._10N.286.52.B9

TaxID: 2070723

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-65
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.70 48.0 3.78e-01 74.5% 34.3%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.60 45.0 3.37e-01 84.3% 94.4%
2x49A04 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.59 51.0 4.13e-01 98.0% 78.8%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 42.0 3.21e-01 80.4% 49.6%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 44.0 3.57e-01 84.3% 87.4%
4qglA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 48.0 3.40e-01 100.0% 66.1%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 2.97e-01 72.5% 94.9%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.43e-01 100.0% 43.2%
2doaA00 1.10.10.2670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase 0.56 40.0 3.32e-01 80.4% 80.8%
2fpqA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.56 45.0 2.78e-01 100.0% 45.7%
2pagA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.55 38.0 2.91e-01 76.5% 60.6%
1vdiA00 6.10.250.180 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 30.0 3.01e-01 100.0% 51.9%
7febA03 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.54 44.0 3.79e-01 100.0% 81.5%
7oslA02 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.53 43.0 3.60e-01 98.0% 71.0%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.34e-01 100.0% 51.3%
2k4nA00 3.30.720.70 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 41.0 3.35e-01 92.2% 73.9%
1rv9A00 3.60.140.10 Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases 0.53 44.0 2.92e-01 100.0% 96.7%
4g3hC00 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.52 42.0 2.69e-01 98.0% 99.7%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 41.0 2.59e-01 98.0% 18.9%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.50 39.0 2.64e-01 92.2% 73.5%
6jzaA00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.50 34.0 2.92e-01 70.6% 66.7%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5071107 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 44.0 3.30e-01 70.6% 58.5%
4586962 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.65 47.0 3.53e-01 76.5% 40.0%
3903618 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.65 51.0 3.22e-01 90.2% 70.7%
3974773 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 47.0 3.66e-01 76.5% 45.7%
3640483 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 54.0 3.52e-01 98.0% 71.9%
1687145 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 51.0 4.24e-01 94.1% 78.6%
3209046 109.4.1.559 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tuberin 0.63 54.0 3.38e-01 100.0% 59.3%
3691173 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.63 52.0 3.91e-01 100.0% 51.0%
3588934 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 43.0 4.03e-01 74.5% 60.0%
3308386 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.62 49.0 3.31e-01 88.2% 65.1%
4011979 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 45.0 3.46e-01 82.4% 90.4%
3733518 101.1.2.392 ↗ alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.61 48.0 3.72e-01 96.1% 49.6%
3652381 101.1.2.392 ↗ alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.60 47.0 3.86e-01 96.1% 57.4%
3989255 101.1.9.141 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF536, HTH_24 0.60 42.0 3.05e-01 78.4% 24.4%
4989447 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.60 41.0 3.52e-01 74.5% 86.5%
4126330 101.1.9.33 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF536 0.60 40.0 2.96e-01 70.6% 25.5%
3561709 5054.1.1.59 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 0.59 41.0 2.43e-01 74.5% 41.0%
4981968 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 39.0 4.09e-01 74.5% 86.7%
3690105 109.4.1.1399 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tuberin, DUF3384 0.58 46.0 2.53e-01 100.0% 4.9%
4013939 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 43.0 3.07e-01 82.4% 90.9%
5071428 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 39.0 3.17e-01 72.5% 76.4%
3856326 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.57 48.0 2.82e-01 100.0% 24.2%
4945146 242.2.1.0 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like 0.56 36.0 3.63e-01 70.6% 66.0%
2337294 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.56 45.0 3.25e-01 90.2% 36.5%
4012689 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.53e-01 98.0% 60.0%
4933456 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.55 37.0 3.34e-01 70.6% 92.5%
4993671 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 3.94e-01 100.0% 56.7%
5077394 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.55 37.0 2.98e-01 72.5% 64.3%
5050369 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 37.0 3.19e-01 72.5% 82.2%
4946594 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 37.0 3.15e-01 74.5% 75.0%
3746278 109.4.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 0.54 45.0 2.39e-01 98.0% 7.1%
5031624 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.54 37.0 3.17e-01 70.6% 77.8%
4808209 101.1.2.67 ↗ alpha arrays › HTH › HTH › winged helix domain › HARE-HTH 0.53 39.0 3.36e-01 92.2% 44.6%
4195219 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.53 39.0 3.23e-01 82.4% 98.0%
4183916 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.53 36.0 2.47e-01 72.5% 34.0%
3844936 101.1.1.273 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26094 0.53 43.0 3.93e-01 100.0% 82.7%
4365970 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.53 41.0 3.27e-01 88.2% 94.5%
4963816 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.52 41.0 3.35e-01 90.2% 96.2%
4977918 101.1.2.210 ↗ alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.52 37.0 3.17e-01 100.0% 43.2%
5010613 3696.1.1.0 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.52 36.0 3.44e-01 76.5% 72.3%
4438245 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.52 38.0 3.28e-01 98.0% 45.3%
5019931 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.13e-01 100.0% 43.3%
4933929 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 35.0 3.16e-01 70.6% 93.3%
3811532 304.9.1.7 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › XS 0.51 34.0 2.92e-01 70.6% 63.3%
2140756 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.50 36.0 2.93e-01 100.0% 38.5%