←Back to structures

MG592459.1__AUR86213.1__NVP1084O_006__00006

Bact-Vir

MG592459.1__AUR86213.1__NVP1084O_006__00006

Identity

Accession:
MG592459 ↗
Kingdom:
phage

Quality

69.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.084.O._10N.261.49.F5

TaxID: 2070724

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-78
PDB
Domain cluster: rep: SRR1747022_scaffold_36_prodigal-single.1__X__X__00131__D11-62
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 58.0 6.36e-01 93.9% 100.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 57.0 5.85e-01 97.0% 85.7%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 57.0 5.50e-01 100.0% 75.3%
2daqA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 62.0 5.26e-01 95.5% 58.2%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 5.85e-01 87.9% 98.1%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 55.0 5.37e-01 100.0% 76.7%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 5.58e-01 93.9% 90.0%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 46.0 5.39e-01 83.3% 97.8%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 5.50e-01 86.4% 100.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 47.0 5.43e-01 81.8% 100.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 59.0 5.99e-01 100.0% 93.9%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 6.00e-01 100.0% 98.4%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 5.98e-01 100.0% 98.4%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 55.0 5.71e-01 100.0% 100.0%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 58.0 5.37e-01 95.5% 79.0%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 46.0 5.04e-01 89.4% 90.7%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 52.0 5.36e-01 89.4% 100.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 56.0 5.54e-01 100.0% 92.8%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 4.62e-01 95.5% 60.2%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 57.0 5.57e-01 100.0% 98.6%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 50.0 5.28e-01 87.9% 96.6%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 51.0 4.80e-01 89.4% 75.9%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 50.0 5.15e-01 87.9% 96.7%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 50.0 4.82e-01 89.4% 80.0%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 54.0 4.50e-01 100.0% 58.1%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 48.0 4.58e-01 86.4% 80.5%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 49.0 5.13e-01 89.4% 98.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 47.0 4.91e-01 87.9% 100.0%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.58 39.0 3.64e-01 75.8% 53.5%
1r4kA01 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.58 52.0 4.14e-01 100.0% 90.9%
1fvuB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.57 50.0 4.12e-01 100.0% 79.3%
5ywwA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 45.0 3.35e-01 92.4% 41.2%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.55 44.0 3.26e-01 92.4% 31.9%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.54 35.0 4.07e-01 72.7% 100.0%
3pihA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.52 39.0 3.84e-01 98.5% 73.6%
3f8dA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 3.58e-01 93.9% 99.2%
1fl2A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 3.53e-01 93.9% 100.0%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.61e-01 87.9% 21.2%
1gqeA03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 36.0 3.37e-01 74.2% 73.5%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 41.0 2.69e-01 87.9% 26.6%
1y7uA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 37.0 2.80e-01 77.3% 60.4%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 62.0 6.73e-01 95.5% 90.9%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 61.0 6.70e-01 95.5% 92.7%
3497168 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.75 64.0 5.36e-01 93.9% 57.3%
3524130 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.74 65.0 5.42e-01 95.5% 58.2%
3451280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 59.0 4.43e-01 100.0% 36.8%
3770399 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.74 64.0 5.37e-01 95.5% 58.2%
3404158 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.74 63.0 5.21e-01 93.9% 54.8%
3423334 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.73 63.0 5.03e-01 95.5% 50.8%
3577505 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 57.0 5.27e-01 100.0% 67.1%
3612090 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 59.0 6.17e-01 100.0% 96.7%
3593768 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 58.0 5.11e-01 89.4% 64.2%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 63.0 6.34e-01 100.0% 96.9%
3494671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 42.0 4.85e-01 77.3% 86.7%
3463688 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.70 62.0 4.26e-01 100.0% 28.9%
4340770 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.70 62.0 5.53e-01 100.0% 90.5%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 60.0 6.08e-01 100.0% 95.4%
4086925 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 58.0 5.88e-01 100.0% 93.8%
4942589 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.68 62.0 6.08e-01 98.5% 92.9%
3950208 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 57.0 5.81e-01 100.0% 95.4%
3391556 4.1.1.384 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_krimper_1st 0.66 59.0 5.08e-01 100.0% 77.1%
3959531 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.48e-01 100.0% 88.6%
3424116 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.65 58.0 4.76e-01 100.0% 72.5%
4438983 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 52.0 4.71e-01 100.0% 64.2%
4549698 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.64 55.0 4.89e-01 95.5% 68.4%
1826911 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 55.0 5.06e-01 95.5% 75.9%
3570230 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 53.0 4.79e-01 92.4% 78.9%
4012002 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 58.0 5.68e-01 100.0% 95.7%
145843 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.63 54.0 4.62e-01 95.5% 60.2%
3575485 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 57.0 4.77e-01 100.0% 70.0%
3627688 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.63 57.0 4.33e-01 100.0% 74.0%
3784968 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 51.0 4.82e-01 89.4% 85.0%
3937478 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 56.0 4.75e-01 100.0% 83.6%
3939132 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 52.0 4.57e-01 93.9% 66.0%
3993228 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 46.0 3.11e-01 84.8% 45.3%
4023327 9.2.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.59 48.0 3.52e-01 95.5% 84.5%
3814727 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.58 47.0 4.76e-01 93.9% 93.8%
3953144 2007.1.14.19 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Mut7-C 0.57 41.0 3.20e-01 77.3% 34.8%
3811020 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.57 46.0 4.07e-01 90.9% 77.0%
3933486 300.1.1.2 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II 0.57 43.0 3.07e-01 83.3% 58.1%
5018209 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 39.0 4.05e-01 72.7% 96.7%
3631215 316.1.1.14 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD 0.56 45.0 3.18e-01 86.4% 50.5%
3635499 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 41.0 4.51e-01 78.8% 100.0%
3879577 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.56 48.0 3.82e-01 100.0% 73.8%
3268580 300.1.1.2 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II 0.55 41.0 3.08e-01 83.3% 73.7%
3787843 316.1.1.14 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD 0.55 44.0 2.72e-01 87.9% 35.4%
3916215 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.77e-01 89.4% 17.3%
4071970 4010.1.1.3 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_3 0.54 44.0 3.04e-01 92.4% 51.4%
3920343 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.54 47.0 3.65e-01 100.0% 73.3%
3988062 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 40.0 3.64e-01 83.3% 58.9%
3824503 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.53 40.0 2.68e-01 84.8% 35.4%
3832622 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.53 43.0 2.73e-01 87.9% 25.7%
3239964 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 42.0 2.78e-01 90.9% 49.0%
5070832 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 44.0 3.44e-01 98.5% 98.1%