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MG592459.1__AUR86446.1__NVP1084O_239__00239

Bact-Vir

MG592459.1__AUR86446.1__NVP1084O_239__00239

Identity

Accession:
MG592459 ↗
Kingdom:
phage

Quality

72.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-56
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 4.13e-01 87.0% 46.1%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 3.73e-01 75.9% 41.9%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 48.0 4.56e-01 100.0% 68.2%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 3.81e-01 77.8% 43.0%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.64 55.0 3.91e-01 100.0% 83.6%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 3.78e-01 77.8% 49.0%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 3.76e-01 81.5% 47.6%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 51.0 4.35e-01 100.0% 56.7%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 3.37e-01 77.8% 77.5%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 3.51e-01 81.5% 40.8%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.95e-01 87.0% 53.3%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.59e-01 81.5% 45.3%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 39.0 2.91e-01 81.5% 26.1%
7qh2C03 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 51.0 4.57e-01 100.0% 73.1%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 43.0 3.66e-01 85.2% 46.3%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 40.0 2.73e-01 100.0% 17.9%
4ns4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 50.0 3.24e-01 100.0% 63.1%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.58 42.0 3.50e-01 85.2% 40.7%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 47.0 4.23e-01 100.0% 67.1%
1vehA01 3.30.300.130 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) 0.58 49.0 4.49e-01 100.0% 73.3%
2hxsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 46.0 3.32e-01 92.6% 56.7%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 44.0 3.93e-01 100.0% 57.6%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.61e-01 79.6% 50.6%
4mfzA02 3.40.630.120 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.57 45.0 3.36e-01 88.9% 99.3%
6le1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 46.0 4.35e-01 98.1% 75.0%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.57 45.0 4.27e-01 100.0% 71.8%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 42.0 3.52e-01 83.3% 47.0%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 3.38e-01 77.8% 40.8%
1r8gA00 3.30.590.20 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.56 45.0 2.89e-01 100.0% 32.1%
2wnsA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 45.0 3.17e-01 100.0% 25.9%
7wu7501 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 35.0 2.66e-01 81.5% 27.0%
2uvaG11 6.10.60.10 Special › Helix non-globular › Hydrophobic Seed Protein › 0.56 34.0 3.43e-01 81.5% 60.0%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.08e-01 81.5% 33.6%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 42.0 3.45e-01 85.2% 68.6%
3ke2B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 3.74e-01 100.0% 64.6%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.53 44.0 3.24e-01 100.0% 64.7%
4gs5A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.53 44.0 3.67e-01 100.0% 54.3%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 45.0 3.66e-01 98.1% 56.3%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 42.0 3.92e-01 100.0% 81.3%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 42.0 3.99e-01 96.3% 80.9%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.51 43.0 3.24e-01 96.3% 62.9%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.51 40.0 3.69e-01 98.1% 65.9%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 44.0 3.15e-01 98.1% 95.8%
2ipiA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 35.0 2.41e-01 75.9% 55.0%
4zg5A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.50 40.0 2.63e-01 90.7% 75.3%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.50 41.0 3.66e-01 100.0% 81.2%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3425722 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.73 54.0 4.62e-01 79.6% 61.2%
3423775 601.16.1.8 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › DUF1218 0.71 52.0 3.70e-01 100.0% 27.1%
5010647 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.71 44.0 2.90e-01 100.0% 15.1%
5010819 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 49.0 3.53e-01 72.2% 32.0%
4400545 3433.1.2.1 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.69 52.0 5.27e-01 92.6% 83.0%
4280539 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.69 48.0 2.66e-01 74.1% 50.3%
3432156 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.68 53.0 5.31e-01 83.3% 94.5%
4974161 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.67 52.0 4.03e-01 87.0% 40.3%
4943632 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 44.0 3.40e-01 70.4% 33.3%
5068241 7577.1.1.10 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › GDC-P 0.64 53.0 3.41e-01 100.0% 72.8%
4928248 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 3.85e-01 87.0% 62.3%
5060792 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 45.0 3.55e-01 77.8% 35.5%
3937515 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.63 50.0 3.06e-01 100.0% 14.2%
4961794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 47.0 3.60e-01 79.6% 38.4%
3289064 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.63 46.0 3.46e-01 81.5% 32.0%
3989790 3433.1.2.1 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.62 43.0 4.47e-01 87.0% 82.0%
3602715 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.61 42.0 3.25e-01 70.4% 32.0%
3743748 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.40e-01 96.3% 66.7%
3786015 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.61 46.0 2.59e-01 83.3% 49.6%
5050929 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.61 47.0 4.21e-01 100.0% 61.3%
3740624 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.60 42.0 3.32e-01 74.1% 36.8%
3290058 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.60 44.0 3.33e-01 81.5% 33.1%
None 0.60 44.0 2.95e-01 79.6% 59.1%
3727253 3922.1.1.250 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › ATG14 0.60 51.0 3.09e-01 96.3% 47.5%
5044892 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 45.0 3.56e-01 81.5% 41.7%
3821553 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.60 46.0 4.79e-01 98.1% 96.0%
3779781 109.4.1.1812 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR, RIH_assoc 0.60 44.0 2.41e-01 100.0% 4.2%
5065308 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.59 43.0 3.45e-01 81.5% 39.2%
3216951 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 43.0 3.29e-01 79.6% 36.4%
3233305 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.59 48.0 4.49e-01 100.0% 77.3%
4948149 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 39.0 3.21e-01 70.4% 36.4%
3506941 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.58 40.0 3.22e-01 74.1% 75.4%
4067342 5069.1.1.15 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.58 49.0 3.07e-01 100.0% 55.0%
3601501 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.58 47.0 2.59e-01 100.0% 10.0%
3249715 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.58 44.0 3.41e-01 83.3% 38.4%
3444901 4954.1.1.0 a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit 0.58 40.0 2.81e-01 79.6% 22.3%
5012054 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.57 48.0 4.53e-01 100.0% 77.1%
3518019 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.57 40.0 3.06e-01 74.1% 31.4%
3637642 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.57 44.0 3.67e-01 100.0% 45.5%
5053551 3241.1.1.1 alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › GPP34 0.57 46.0 3.16e-01 92.6% 33.3%
5005164 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.56 41.0 3.42e-01 81.5% 43.5%
3519143 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.56 49.0 3.07e-01 100.0% 59.3%
5051534 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 40.0 2.86e-01 77.8% 24.3%
3285382 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 49.0 3.90e-01 100.0% 89.1%
4388283 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.56 46.0 4.28e-01 100.0% 75.7%
3471111 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.56 45.0 3.11e-01 100.0% 68.1%
3501234 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 45.0 2.85e-01 94.4% 68.2%
3417192 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.55 43.0 4.49e-01 98.1% 96.0%
4590279 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 44.0 2.88e-01 100.0% 66.1%
3634662 327.11.2.19 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_11 0.55 45.0 3.94e-01 100.0% 61.1%
4982514 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.55 45.0 4.20e-01 100.0% 76.0%
3569598 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.54 37.0 2.89e-01 74.1% 31.4%
3875765 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 43.0 2.79e-01 100.0% 52.7%
4322692 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.54 44.0 3.99e-01 100.0% 65.0%
3690229 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.53 42.0 2.98e-01 98.1% 68.4%
3699192 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.53 41.0 2.67e-01 87.0% 65.3%
3800293 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 42.0 3.70e-01 100.0% 65.6%
3873803 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.52 42.0 3.74e-01 100.0% 64.4%
3200582 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.52 41.0 3.25e-01 88.9% 40.0%
3853273 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.52 42.0 4.31e-01 100.0% 100.0%
3841567 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.52 41.0 2.90e-01 98.1% 68.8%
4011414 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.51 43.0 2.95e-01 100.0% 25.1%
3587631 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.51 43.0 3.31e-01 100.0% 69.3%
4212883 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.51 41.0 2.91e-01 100.0% 80.5%
3480534 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.13e-01 88.9% 41.7%