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MG592460.1__AUR86484.1__NVP1085O_33__00033
Bact-VirMG592460.1__AUR86484.1__NVP1085O_33__00033
Identity
- Accession:
- MG592460 ↗
- Kingdom:
- phage
Quality
67.4
mean pLDDT
Taxonomy
TaxID: 1881193
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-63
Domain cluster:
rep: MT162466.1__QIN96657.1__X__00022__D78-140
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 30.7 | 4.30e-07 | 98.3% | 51.3% |
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.81 | 72.0 | 6.19e-01 | 100.0% | 87.0% |
| 2qlcA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.79 | 58.0 | 4.47e-01 | 78.0% | 42.1% |
| 3ifrA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.77 | 54.0 | 3.55e-01 | 74.6% | 66.4% |
| 1mgpA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.72 | 55.0 | 4.07e-01 | 83.1% | 88.4% |
| 2x5pA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.72 | 49.0 | 4.04e-01 | 76.3% | 40.4% |
| 2pw9C03 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.71 | 48.0 | 3.70e-01 | 71.2% | 33.3% |
| 7pjjA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.71 | 47.0 | 3.64e-01 | 76.3% | 31.8% |
| 2a74A02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.70 | 50.0 | 4.13e-01 | 74.6% | 49.5% |
| 4h4nA00 | 2.60.40.3750 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.70 | 52.0 | 5.17e-01 | 79.7% | 77.4% |
| 2df7A02 | 2.60.120.660 | Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus | 0.69 | 50.0 | 3.81e-01 | 78.0% | 41.4% |
| 3irzA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 47.0 | 3.94e-01 | 74.6% | 42.4% |
| 2j1vA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.69 | 49.0 | 3.73e-01 | 76.3% | 31.9% |
| 1ut9A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 48.0 | 4.00e-01 | 72.9% | 55.1% |
| 4p0dA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 48.0 | 3.80e-01 | 76.3% | 38.3% |
| 3m70A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.66 | 44.0 | 3.63e-01 | 76.3% | 38.7% |
| 5jtwA02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.66 | 48.0 | 3.98e-01 | 76.3% | 49.0% |
| 3m1cA04 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.66 | 46.0 | 3.57e-01 | 74.6% | 40.2% |
| 3nqhA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.66 | 50.0 | 3.77e-01 | 81.4% | 38.2% |
| 3bgaA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 47.0 | 3.92e-01 | 78.0% | 51.4% |
| 1umhA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.65 | 47.0 | 3.33e-01 | 78.0% | 29.3% |
| 4g5aA00 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 45.0 | 3.85e-01 | 74.6% | 46.5% |
| 5icuA00 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 46.0 | 3.88e-01 | 76.3% | 49.0% |
| 3isyA00 | 2.60.40.2360 | Mainly Beta › Sandwich › Immunoglobulin-like › Intracellular proteinase inhibitor BsuPI | 0.64 | 46.0 | 3.67e-01 | 76.3% | 52.1% |
| 1g71A01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.64 | 49.0 | 3.35e-01 | 88.1% | 21.6% |
| 2p9rA00 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.64 | 45.0 | 3.77e-01 | 74.6% | 49.0% |
| 3hqiA01 | 2.60.210.10 | Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 0.64 | 46.0 | 3.55e-01 | 78.0% | 49.6% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.64 | 45.0 | 3.45e-01 | 74.6% | 37.6% |
| 3afgA03 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 45.0 | 3.76e-01 | 76.3% | 44.1% |
| 3f1sB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 43.0 | 3.75e-01 | 74.6% | 90.3% |
| 3of1A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 41.0 | 3.21e-01 | 72.9% | 31.6% |
| 3bgaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 45.0 | 3.73e-01 | 81.4% | 55.9% |
| 3ll3B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.61 | 43.0 | 2.93e-01 | 76.3% | 34.7% |
| 1hx6A02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 43.0 | 3.28e-01 | 76.3% | 66.7% |
| 3rj2X00 | 2.60.120.1150 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 43.0 | 3.35e-01 | 76.3% | 34.6% |
| 3fedA02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.60 | 45.0 | 3.14e-01 | 84.7% | 76.6% |
| 2vugA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.60 | 41.0 | 3.94e-01 | 74.6% | 61.1% |
| 1yaxB00 | 3.30.450.140 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PhoQ sensor domain | 0.55 | 40.0 | 3.01e-01 | 76.3% | 73.9% |
| 4limA00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.55 | 41.0 | 2.61e-01 | 86.4% | 13.4% |
| 1hx6B01 | 2.70.9.30 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 | 0.54 | 38.0 | 2.65e-01 | 78.0% | 72.1% |
| 4c23B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 38.0 | 2.66e-01 | 76.3% | 38.0% |
| 3ewkA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 38.0 | 3.05e-01 | 74.6% | 99.1% |
| 4gxbA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 36.0 | 3.25e-01 | 78.0% | 47.4% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5052958 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.88 | 82.0 | 7.30e-01 | 100.0% | 75.0% |
| 4947741 | 821.1.1.17 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 | 0.88 | 81.0 | 7.06e-01 | 100.0% | 80.0% |
| 4945828 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.87 | 80.0 | 6.84e-01 | 100.0% | 78.9% |
| 4236834 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.87 | 79.0 | 6.93e-01 | 100.0% | 80.0% |
| 4515517 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.86 | 79.0 | 6.77e-01 | 100.0% | 77.8% |
| 4974405 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.86 | 79.0 | 6.77e-01 | 100.0% | 77.8% |
| 4457400 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.86 | 79.0 | 6.41e-01 | 100.0% | 66.7% |
| 4977317 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.86 | 78.0 | 6.10e-01 | 100.0% | 58.8% |
| 4170310 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.85 | 79.0 | 6.75e-01 | 100.0% | 78.9% |
| 4111785 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.85 | 78.0 | 6.57e-01 | 100.0% | 73.7% |
| 4310838 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.85 | 78.0 | 6.84e-01 | 100.0% | 81.2% |
| 3588392 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.85 | 78.0 | 6.45e-01 | 100.0% | 71.0% |
| 5070656 | 821.1.1.15 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 | 0.85 | 74.0 | 6.51e-01 | 100.0% | 67.1% |
| 4468826 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.84 | 77.0 | 6.49e-01 | 100.0% | 72.6% |
| 4994096 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.84 | 77.0 | 6.27e-01 | 100.0% | 57.7% |
| 3419007 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.84 | 76.0 | 6.05e-01 | 100.0% | 57.4% |
| 4054044 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.84 | 75.0 | 6.28e-01 | 100.0% | 77.0% |
| 4980287 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.83 | 72.0 | 6.35e-01 | 100.0% | 67.1% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.81 | 73.0 | 6.33e-01 | 100.0% | 72.7% |
| 5030770 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.79 | 70.0 | 5.96e-01 | 100.0% | 67.4% |
| 4964937 | 821.1.1.15 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 | 0.77 | 64.0 | 6.07e-01 | 93.2% | 77.1% |
| 5023611 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.76 | 48.0 | 4.11e-01 | 71.2% | 40.4% |
| 4959201 | 815.1.1.1 ↗ | a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 › MC1 | 0.76 | 52.0 | 4.47e-01 | 72.9% | 45.3% |
| 3839138 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.75 | 51.0 | 3.31e-01 | 74.6% | 16.2% |
| 5030426 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.74 | 47.0 | 4.05e-01 | 71.2% | 42.2% |
| 5046988 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.74 | 47.0 | 3.98e-01 | 71.2% | 40.4% |
| 4932504 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.74 | 47.0 | 4.03e-01 | 71.2% | 41.1% |
| 5044154 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.74 | 47.0 | 4.00e-01 | 71.2% | 40.9% |
| 4933077 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.74 | 46.0 | 3.92e-01 | 71.2% | 40.0% |
| 4581597 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.73 | 47.0 | 4.04e-01 | 71.2% | 41.1% |
| 4274058 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.71 | 45.0 | 3.87e-01 | 71.2% | 40.0% |
| 4453992 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.71 | 47.0 | 3.79e-01 | 71.2% | 35.4% |
| 5036714 | 2492.1.1.16 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › TM1506 | 0.71 | 46.0 | 3.72e-01 | 71.2% | 33.3% |
| 3407663 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.70 | 52.0 | 3.85e-01 | 79.7% | 46.9% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.68 | 46.0 | 5.11e-01 | 71.2% | 100.0% |
| 5018703 | 815.1.1.0 ↗ | a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 | 0.68 | 47.0 | 4.13e-01 | 72.9% | 60.0% |
| 4319035 | 11.1.1.608 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail | 0.68 | 45.0 | 4.32e-01 | 71.2% | 59.4% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.67 | 45.0 | 4.93e-01 | 71.2% | 100.0% |
| 4952123 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.65 | 46.0 | 4.65e-01 | 76.3% | 75.0% |
| 3789849 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 44.0 | 4.43e-01 | 72.9% | 78.3% |
| 3972503 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.63 | 43.0 | 3.30e-01 | 74.6% | 31.1% |
| 4964967 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.62 | 46.0 | 3.61e-01 | 100.0% | 35.0% |
| 4250283 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.62 | 55.0 | 4.58e-01 | 100.0% | 100.0% |
| 3957978 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.60 | 42.0 | 3.63e-01 | 72.9% | 51.1% |
| 3837952 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 41.0 | 3.35e-01 | 74.6% | 61.0% |
| 3281602 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.58 | 42.0 | 4.48e-01 | 89.8% | 97.9% |
| 3919775 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 39.0 | 3.29e-01 | 74.6% | 54.0% |
| 2794904 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.53 | 38.0 | 3.72e-01 | 78.0% | 98.5% |
| 3519702 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 37.0 | 2.97e-01 | 76.3% | 87.5% |
| 4010374 | 223.1.1.156 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAPES3 | 0.51 | 38.0 | 2.97e-01 | 78.0% | 55.8% |
| 3313678 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 38.0 | 2.96e-01 | 83.1% | 89.3% |
| 5048521 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 36.0 | 3.16e-01 | 74.6% | 94.1% |
| 3982526 | 223.1.1.61 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › SMP_2 | 0.50 | 37.0 | 2.88e-01 | 78.0% | 51.2% |
D2
high
residues 76-130