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MG592461.1__AUR86522.1__NVP1086O_09__00009

Bact-Vir

MG592461.1__AUR86522.1__NVP1086O_09__00009

Identity

Accession:
MG592461 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 170-276
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03864.23 best Phage_cap_E 29.4 6.00e-07 100.0% 29.9%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xgpB01 3.30.1930.10 Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain 0.81 76.0 6.94e-01 100.0% 82.1%
3bqwA02 3.30.1930.10 Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain 0.76 69.0 6.28e-01 100.0% 75.2%
3bjqA00 3.90.1690.10 Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain 0.70 66.0 4.66e-01 100.0% 53.0%
1jlcB04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.60 34.0 4.31e-01 92.5% 95.3%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 39.0 3.66e-01 76.6% 54.1%
2qh0A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 37.0 3.55e-01 80.4% 55.0%
1ecsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 42.0 4.09e-01 78.5% 83.3%
2r5vA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 37.0 3.36e-01 77.6% 47.3%
3rmuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 38.0 3.52e-01 77.6% 54.5%
2inbA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 38.0 3.58e-01 97.2% 58.6%
2qqzA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 40.0 3.91e-01 78.5% 83.5%
3l20A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 40.0 3.58e-01 80.4% 79.9%
1u7iA01 3.30.720.100 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 33.0 3.99e-01 71.0% 100.0%
1r9cA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 37.0 3.55e-01 75.7% 79.2%
1rybA00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.51 37.0 3.12e-01 75.7% 71.5%
1cvlA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 43.0 3.17e-01 97.2% 90.5%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2640765 2485.3.1.1 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.79 75.0 5.04e-01 100.0% 34.0%
1005479 2485.3.1.1 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.76 69.0 4.68e-01 100.0% 29.7%
333200 2485.3.1.1 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.72 68.0 4.76e-01 100.0% 53.8%
4020211 7590.1.1.0 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.63 40.0 3.60e-01 96.3% 46.2%
5018120 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.62 37.0 4.37e-01 75.7% 95.4%
3456832 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.56 45.0 3.69e-01 95.3% 46.3%
1214550 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.56 36.0 4.06e-01 79.4% 89.7%
3448544 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.54 34.0 3.92e-01 73.8% 94.3%
5012811 2006.1.3.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DUF3226 0.54 39.0 3.49e-01 74.8% 89.5%
4975115 7541.1.1.0 a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins 0.54 39.0 3.54e-01 96.3% 52.9%
3740687 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 38.0 2.77e-01 74.8% 60.0%
4611584 2004.1.1.414 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 0.53 38.0 3.27e-01 73.8% 68.2%
4291495 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.53 41.0 3.50e-01 100.0% 50.3%
3297936 211.1.1.21 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › At5g48480-like_N 0.53 35.0 3.96e-01 74.8% 94.7%
3520429 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.53 41.0 3.45e-01 100.0% 50.3%
4087573 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.52 39.0 3.39e-01 80.4% 71.2%
4983298 7541.1.1.1 a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.52 38.0 3.44e-01 96.3% 54.7%
4776537 7579.1.1.5 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.51 37.0 3.37e-01 92.5% 53.9%
4930593 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.51 43.0 3.53e-01 94.4% 76.1%
3928839 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.51 35.0 3.18e-01 79.4% 49.0%
5071556 2004.1.1.120 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII 0.51 44.0 3.49e-01 100.0% 67.3%
3606629 2007.1.2.28 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_A-cyclase_1 0.50 30.0 2.69e-01 86.0% 38.2%
4946383 2004.1.1.233 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cas3-like_C_2 0.50 44.0 2.96e-01 100.0% 37.1%
D2 medium residues 74-169_277-358
PDB
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bqwA01 3.15.30.10 Alpha Beta › Super Roll › putative capsid protein of prophage fold › putative capsid protein of prophage domain like 0.77 57.0 5.34e-01 93.8% 63.8%
4r6uA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.75 25.0 3.31e-01 92.7% 52.4%
8ediA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 25.0 3.33e-01 93.8% 55.8%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.71 33.0 3.87e-01 92.1% 60.8%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 24.0 3.64e-01 91.0% 69.2%
3n0vA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 24.0 3.50e-01 92.1% 64.3%
4of8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 26.0 3.39e-01 93.3% 58.3%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.69 28.0 3.18e-01 96.6% 46.4%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 27.0 3.51e-01 92.7% 60.6%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 24.0 3.31e-01 92.7% 60.0%
4i59A02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.67 23.0 2.47e-01 89.9% 33.1%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 25.0 3.24e-01 93.3% 58.4%
3nrbB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 23.0 3.29e-01 91.6% 63.9%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.64 25.0 3.45e-01 91.6% 69.8%
2ednA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 25.0 3.01e-01 93.3% 55.1%
1ekrA00 3.30.70.640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain 0.60 31.0 3.43e-01 93.3% 59.4%
5t89X05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 26.0 3.20e-01 91.6% 63.6%
3bjqA00 3.90.1690.10 Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain 0.59 55.0 4.57e-01 100.0% 77.4%
6mw4A01 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.58 27.0 3.17e-01 91.0% 59.2%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.57 24.0 3.62e-01 91.0% 97.1%
1omsA00 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.55 34.0 4.13e-01 94.4% 95.6%
3amiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.55 27.0 2.62e-01 92.7% 39.2%
5cxdB01 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.54 36.0 4.32e-01 91.0% 100.0%
2ychA02 3.30.1490.300 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.54 22.0 3.32e-01 88.8% 100.0%
1vjhA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 28.0 3.36e-01 93.3% 78.3%
1eq6A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 31.0 3.10e-01 92.1% 57.1%
3eqvA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 25.0 2.86e-01 89.9% 60.2%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2640765 2485.3.1.1 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.79 75.0 5.82e-01 100.0% 79.9%
3786241 864.1.1.2 a+b two layers › DLC › DLC › DLC › Tctex-1 0.74 27.0 3.50e-01 92.7% 56.3%
1005479 2485.3.1.1 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.74 71.0 5.50e-01 99.4% 78.4%
4948152 256.1.1.0 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.69 26.0 4.19e-01 89.9% 90.0%
3774440 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 25.0 2.77e-01 92.1% 39.3%
2968064 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.66 63.0 4.92e-01 100.0% 79.5%
4028720 273.1.1.2 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.66 28.0 3.31e-01 92.1% 53.8%
3513770 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.64 60.0 4.93e-01 98.9% 76.5%
4313471 2485.3.1.11 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.62 59.0 4.83e-01 100.0% 70.3%
3965498 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.62 59.0 4.69e-01 100.0% 76.9%
4241362 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.61 58.0 4.81e-01 100.0% 74.9%
3088027 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.61 57.0 4.92e-01 99.4% 74.3%
4890673 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.61 58.0 4.50e-01 100.0% 74.5%
3110786 2485.3.1.14 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like 0.60 56.0 4.44e-01 100.0% 82.6%
3946670 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.60 56.0 4.80e-01 100.0% 78.5%
2651377 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.59 56.0 4.62e-01 99.4% 73.7%
3944238 2485.3.1.7 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.59 56.0 4.69e-01 99.4% 78.1%
3583655 2485.3.1.5 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 0.59 56.0 4.48e-01 99.4% 72.2%
3963274 2485.3.1.9 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.59 54.0 4.27e-01 100.0% 87.4%
3501742 2485.3.1.21 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phi29_MCP 0.59 55.0 4.45e-01 98.3% 75.8%
333200 2485.3.1.1 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.59 55.0 4.54e-01 100.0% 77.6%
2538948 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.58 55.0 4.55e-01 100.0% 71.9%
3598105 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.58 34.0 4.09e-01 94.4% 85.8%
3075730 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.58 55.0 4.38e-01 100.0% 73.7%
5081698 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.58 54.0 4.45e-01 100.0% 76.1%
2989356 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.57 53.0 4.48e-01 100.0% 76.5%
3977525 2485.3.1.4 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 0.57 53.0 4.26e-01 100.0% 83.5%
3395838 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 28.0 3.30e-01 93.3% 65.4%
5083051 2485.3.1.12 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 0.56 53.0 4.44e-01 100.0% 86.6%
4929755 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.56 53.0 4.53e-01 100.0% 78.9%
2988313 2485.3.1.18 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.56 53.0 4.53e-01 100.0% 73.2%
2806362 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.55 51.0 4.42e-01 98.9% 70.6%
3522713 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.53 32.0 3.46e-01 91.0% 70.0%
3952452 2485.3.1.3 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.53 48.0 4.10e-01 100.0% 73.7%
3280926 881.1.1.6 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.52 30.0 3.11e-01 93.3% 56.9%
4954548 2485.3.1.0 a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.51 47.0 4.04e-01 100.0% 76.4%