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MG592470.1__AUR87148.1__NVP1097O_02__00002
Bact-VirMG592470.1__AUR87148.1__NVP1097O_02__00002
Identity
- Accession:
- MG592470 ↗
- Kingdom:
- phage
Quality
71.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Schitoviridae›
Dorisvirus›
Vibrio_phage_1.097.O._10N.286.49.B3
TaxID: 1881383
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-64
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.77 | 38.0 | 3.38e-01 | 88.7% | 34.7% |
| 2cduA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.77 | 43.0 | 3.01e-01 | 100.0% | 19.2% |
| 1ml8A01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.76 | 40.0 | 4.91e-01 | 92.5% | 82.4% |
| 3rp7A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.74 | 41.0 | 2.84e-01 | 100.0% | 17.3% |
| 3vn5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.70 | 36.0 | 3.27e-01 | 88.7% | 36.2% |
| 3npfA02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.70 | 40.0 | 3.65e-01 | 96.2% | 41.4% |
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 42.0 | 4.36e-01 | 100.0% | 64.0% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 41.0 | 3.85e-01 | 98.1% | 47.1% |
| 1y13A00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.67 | 43.0 | 2.99e-01 | 100.0% | 21.5% |
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.67 | 40.0 | 4.17e-01 | 98.1% | 62.5% |
| 3npfB01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.66 | 39.0 | 3.63e-01 | 96.2% | 42.4% |
| 2ct4A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.66 | 40.0 | 3.64e-01 | 98.1% | 45.7% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.66 | 40.0 | 3.76e-01 | 100.0% | 48.5% |
| 1qqhA00 | 2.170.200.10 | Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain | 0.65 | 47.0 | 3.51e-01 | 79.2% | 63.9% |
| 3h41A02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 38.0 | 3.53e-01 | 96.2% | 42.6% |
| 3d6wB02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.65 | 42.0 | 4.69e-01 | 100.0% | 89.7% |
| 3c6fA01 | 3.30.240.20 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › bsu07140 like domains | 0.64 | 50.0 | 4.82e-01 | 88.7% | 90.3% |
| 1d1lA00 | 3.30.240.10 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor | 0.64 | 52.0 | 4.99e-01 | 90.6% | 90.2% |
| 3hr8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.64 | 43.0 | 3.81e-01 | 100.0% | 49.3% |
| 2vknA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 37.0 | 3.46e-01 | 96.2% | 43.9% |
| 3pfsB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 53.0 | 4.00e-01 | 100.0% | 57.7% |
| 1uirA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 45.0 | 2.98e-01 | 86.8% | 57.3% |
| 1fx7B03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.59 | 36.0 | 3.20e-01 | 100.0% | 38.7% |
| 3q6oA02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 52.0 | 4.19e-01 | 100.0% | 76.7% |
| 3d0fA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 44.0 | 4.00e-01 | 81.1% | 94.5% |
| 2wdoA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.56 | 42.0 | 3.27e-01 | 83.0% | 52.8% |
| 1xezA04 | 2.100.10.30 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain | 0.54 | 42.0 | 3.21e-01 | 88.7% | 88.9% |
| 3oyyB03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 40.0 | 3.95e-01 | 86.8% | 100.0% |
| 5tkwA01 | 3.30.420.380 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 37.0 | 2.74e-01 | 79.2% | 35.9% |
| 6g6qA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 41.0 | 3.23e-01 | 98.1% | 95.1% |
| 3pijA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 37.0 | 2.34e-01 | 81.1% | 45.7% |
| 1jegA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 39.0 | 3.80e-01 | 86.8% | 73.3% |
| 2lqoA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 41.0 | 3.68e-01 | 100.0% | 81.8% |
| 6ks6G01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.50 | 39.0 | 2.68e-01 | 98.1% | 74.6% |
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.50 | 40.0 | 2.91e-01 | 100.0% | 46.4% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4683204 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.85 | 49.0 | 3.84e-01 | 100.0% | 29.5% |
| 5014724 | 295.1.1.51 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C | 0.79 | 46.0 | 3.71e-01 | 100.0% | 31.0% |
| 2700914 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.73 | 42.0 | 3.65e-01 | 98.1% | 37.5% |
| 4958385 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.72 | 43.0 | 4.84e-01 | 100.0% | 80.0% |
| 4998989 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.69 | 43.0 | 2.67e-01 | 98.1% | 12.4% |
| 5066751 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.69 | 40.0 | 2.41e-01 | 98.1% | 8.8% |
| 4119657 | 3740.1.1.1 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C | 0.69 | 42.0 | 2.59e-01 | 98.1% | 12.2% |
| 3941962 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.68 | 42.0 | 3.52e-01 | 100.0% | 36.7% |
| 4964361 | 502.1.1.3 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › DUF7348 | 0.67 | 41.0 | 3.73e-01 | 100.0% | 45.7% |
| 3625722 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.66 | 36.0 | 3.52e-01 | 90.6% | 45.0% |
| 4950628 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.65 | 40.0 | 2.51e-01 | 98.1% | 12.1% |
| 4992061 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.62 | 52.0 | 3.71e-01 | 100.0% | 77.7% |
| 3936768 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 43.0 | 3.28e-01 | 77.4% | 85.2% |
| 3246081 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.60 | 34.0 | 3.53e-01 | 92.5% | 54.0% |
| 4026796 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.60 | 50.0 | 4.01e-01 | 100.0% | 77.4% |
| 3939311 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.59 | 37.0 | 2.88e-01 | 96.2% | 30.9% |
| 4043931 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.58 | 45.0 | 4.41e-01 | 90.6% | 98.3% |
| 3425564 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.57 | 45.0 | 2.66e-01 | 94.3% | 43.8% |
| 3279550 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.55 | 31.0 | 3.58e-01 | 86.8% | 68.6% |
| 4330222 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.55 | 47.0 | 3.72e-01 | 100.0% | 45.8% |
| 3270679 | 2003.1.2.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like | 0.52 | 41.0 | 2.46e-01 | 98.1% | 75.7% |
| 3399234 | 395.1.1.0 ↗ | few secondary structure elements › Midkine-related › Midkine-related › Midkine-related | 0.52 | 38.0 | 3.88e-01 | 92.5% | 88.0% |
| 3435839 | 206.1.1.7 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase | 0.51 | 40.0 | 2.75e-01 | 90.6% | 25.0% |
| 5069260 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.51 | 35.0 | 3.62e-01 | 73.6% | 80.0% |