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MG592470.1__AUR87215.1__NVP1097O_69__00069
Bact-VirMG592470.1__AUR87215.1__NVP1097O_69__00069
Identity
- Accession:
- MG592470 ↗
- Kingdom:
- phage
Quality
67.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Schitoviridae›
Dorisvirus›
Vibrio_phage_1.097.O._10N.286.49.B3
TaxID: 1881383
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-101
Domain cluster:
rep: IMGVR_UViG_648028029_000001-648028029-648062639__D4-128
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10544.16 best | T5orf172 | 20.2 | 1.00e-03 | 84.9% | 70.4% |
| PF01541.31 | GIY-YIG | 36.1 | 8.90e-09 | 66.7% | 74.4% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.74 | 58.0 | 6.06e-01 | 82.8% | 98.9% |
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.72 | 52.0 | 5.44e-01 | 79.8% | 83.1% |
| 3gr0D01 | 3.30.70.1780 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 28.0 | 3.79e-01 | 75.8% | 100.0% |
| 1ycoA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.58 | 43.0 | 3.17e-01 | 79.8% | 90.2% |
| 1gymA00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.52 | 41.0 | 2.95e-01 | 82.8% | 82.1% |
| 3cfxA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 37.0 | 3.15e-01 | 74.7% | 65.1% |
| 2qdlA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.50 | 31.0 | 3.71e-01 | 80.8% | 98.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4397568 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.84 | 58.0 | 6.12e-01 | 70.7% | 80.0% |
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.82 | 57.0 | 5.96e-01 | 70.7% | 78.9% |
| 4947741 | 821.1.1.17 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 | 0.73 | 53.0 | 5.76e-01 | 79.8% | 88.2% |
| 4236834 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.72 | 54.0 | 5.80e-01 | 100.0% | 90.6% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.72 | 54.0 | 5.70e-01 | 81.8% | 89.8% |
| 3595803 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 33.0 | 4.04e-01 | 84.8% | 100.0% |
| 4643881 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.53 | 40.0 | 3.62e-01 | 89.9% | 57.1% |
| 4202856 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.52 | 47.0 | 3.99e-01 | 100.0% | 75.8% |
| 5057917 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.50 | 45.0 | 3.77e-01 | 100.0% | 69.4% |