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MG592470.1__AUR87223.1__NVP1097O_77__00077

Bact-Vir

MG592470.1__AUR87223.1__NVP1097O_77__00077

Identity

Accession:
MG592470 ↗
Kingdom:
phage

Quality

81.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Dorisvirus› Vibrio_phage_1.097.O._10N.286.49.B3

TaxID: 1881383

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-108
PDB
Domain cluster: rep: ON286972.1__USL83473.1__A4_397__00152__D20-123
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nr9A00 1.20.1540.10 Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like 0.62 51.0 3.94e-01 93.8% 89.1%
2l4eA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 34.0 3.83e-01 88.7% 77.2%
2a7oA00 1.10.1740.100 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain 0.52 41.0 3.90e-01 90.0% 90.0%
5ceeA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 43.0 3.20e-01 100.0% 95.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3952923 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.50 34.0 3.18e-01 76.2% 56.0%
D2 medium residues 109-169
PDB
Domain cluster: rep: ON453898.1__WAK79281.1__X__00081__D137-191
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tfmA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 47.0 3.81e-01 70.5% 38.5%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 44.0 3.68e-01 70.5% 41.7%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 43.0 3.42e-01 70.5% 40.3%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 40.0 3.46e-01 70.5% 43.5%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 39.0 3.01e-01 70.5% 29.2%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 52.0 4.52e-01 100.0% 63.8%
2kcwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 36.0 2.73e-01 100.0% 24.5%
2dt8A02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.58 51.0 3.96e-01 96.7% 52.3%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 32.0 3.54e-01 75.4% 69.6%
1r26A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 44.0 3.71e-01 88.5% 92.9%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 36.0 3.16e-01 70.5% 44.6%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 46.0 4.36e-01 95.1% 84.2%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 47.0 4.02e-01 100.0% 75.9%
2pptA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 41.0 3.53e-01 83.6% 100.0%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.55 46.0 2.78e-01 95.1% 71.4%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 48.0 4.05e-01 100.0% 80.8%
3rv0B03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 45.0 4.20e-01 100.0% 73.4%
3icjA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.54 39.0 3.67e-01 88.5% 60.8%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.54 35.0 3.68e-01 85.2% 75.9%
6g85A01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 44.0 3.39e-01 91.8% 49.0%
4bndA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 43.0 3.35e-01 95.1% 68.6%
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 38.0 3.38e-01 75.4% 88.5%
1h30A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 2.90e-01 86.9% 88.5%
2dy1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 2.88e-01 100.0% 62.9%
2in3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 42.0 3.89e-01 93.4% 98.8%
5bulA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 2.77e-01 100.0% 74.5%
3fogA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 46.0 3.86e-01 100.0% 78.4%
4gxzD00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 39.0 2.92e-01 86.9% 95.3%
1e6vC00 3.90.320.20 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › Methyl-coenzyme M reductase, gamma subunit 0.51 44.0 2.96e-01 100.0% 74.6%
1xp8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.50 37.0 3.76e-01 90.2% 81.7%
4erdA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 36.0 3.04e-01 77.0% 60.2%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4959884 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.75 53.0 5.56e-01 91.8% 83.6%
3979087 4100.1.1.7 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › PF27115 0.72 48.0 4.66e-01 91.8% 61.4%
3607724 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.71 48.0 3.74e-01 70.5% 44.6%
4336618 301.13.1.3 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › FakA-like_C 0.69 59.0 4.83e-01 98.4% 52.8%
3699576 220.1.1.230 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26289 0.68 46.0 3.52e-01 70.5% 41.5%
4826872 2010.1.1.4 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › FakA-like_C 0.67 56.0 4.58e-01 93.4% 52.4%
4963432 4076.2.1.7 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › DUF5817 0.66 45.0 3.97e-01 70.5% 61.2%
3274553 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 44.0 3.65e-01 70.5% 40.0%
4950325 375.1.3.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.65 44.0 3.91e-01 70.5% 58.8%
3775836 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.63 43.0 3.48e-01 70.5% 40.0%
3578128 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 45.0 4.71e-01 95.1% 89.1%
3622767 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.60 50.0 4.40e-01 95.1% 82.1%
3176830 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 40.0 3.31e-01 70.5% 43.6%
4323652 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 46.0 3.97e-01 95.1% 53.3%
4996608 2007.9.1.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 0.58 51.0 3.58e-01 100.0% 66.0%
4012132 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 40.0 3.22e-01 72.1% 71.7%
4131084 2004.1.1.14 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.57 48.0 3.22e-01 100.0% 94.0%
5073869 2485.1.1.3 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glutaredoxin 0.55 41.0 3.56e-01 80.3% 75.8%
1780243 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.55 41.0 2.85e-01 86.9% 58.3%
5079418 5050.1.1.10 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 0.54 45.0 3.18e-01 96.7% 54.4%
4015541 4205.1.1.0 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like 0.54 40.0 2.72e-01 78.7% 27.0%
4975819 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 45.0 3.13e-01 96.7% 74.2%
3618501 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.53 34.0 3.09e-01 72.1% 47.1%
4030016 3343.1.1.2 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.52 41.0 2.37e-01 86.9% 13.4%
3290750 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.52 37.0 2.84e-01 78.7% 32.9%
3404205 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 37.0 3.41e-01 78.7% 100.0%
4943134 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 28.0 3.27e-01 70.5% 82.9%
3584264 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 46.0 3.62e-01 100.0% 85.6%
3837944 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 41.0 3.43e-01 91.8% 79.1%
3518993 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.50 30.0 3.59e-01 78.7% 100.0%
3581093 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.50 40.0 3.67e-01 86.9% 100.0%
5059922 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 34.0 3.04e-01 82.0% 46.3%