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MG592473.1__AUR87538.1__NVP1101O_127__00127

Bact-Vir

MG592473.1__AUR87538.1__NVP1101O_127__00127

Identity

Accession:
MG592473 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.101.O._10N.261.45.C6

TaxID: 2070725

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-95
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 35.0 3.18e-01 87.2% 38.2%
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.64 42.0 3.68e-01 83.0% 46.4%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 39.0 3.94e-01 100.0% 61.9%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.59 49.0 4.03e-01 92.6% 62.2%
1t3qC03 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.58 49.0 4.71e-01 94.7% 95.5%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.58 50.0 4.21e-01 95.7% 68.9%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 31.0 3.95e-01 100.0% 98.1%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.55 45.0 3.88e-01 89.4% 90.9%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.55 38.0 3.51e-01 71.3% 86.4%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 43.0 3.86e-01 85.1% 90.2%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.53 38.0 3.68e-01 78.7% 66.3%
2joeA01 3.30.1830.10 Alpha Beta › 2-Layer Sandwich › YehR-like fold › YehR-like 0.53 48.0 4.35e-01 100.0% 98.4%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.53 35.0 3.86e-01 77.7% 82.1%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.52 38.0 3.58e-01 78.7% 63.4%
4h0pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 41.0 3.28e-01 88.3% 71.6%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.51 36.0 3.63e-01 84.0% 71.9%
1qsmD00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 39.0 3.41e-01 83.0% 75.0%
1xf8A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 40.0 3.37e-01 85.1% 66.1%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.51 45.0 4.31e-01 96.8% 88.1%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.50 42.0 3.58e-01 93.6% 68.9%
5jeaD00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.50 40.0 3.05e-01 86.2% 95.5%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.50 33.0 3.45e-01 89.4% 75.3%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5063704 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.82 38.0 4.56e-01 85.1% 64.6%
3781393 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.71 46.0 4.93e-01 80.9% 75.0%
4606694 4099.1.1.26 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Kre28 0.67 45.0 4.78e-01 96.8% 78.3%
5049477 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 38.0 4.65e-01 78.7% 90.0%
4986732 331.16.1.1 ↗ a+b two layers › TBP-like › TA0095-like › TA0095-like › DUF5611 0.63 40.0 4.49e-01 75.5% 85.7%
3744814 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.61 39.0 4.05e-01 97.9% 67.8%
5023640 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.61 41.0 4.39e-01 95.7% 82.3%
5022821 327.3.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.60 42.0 4.39e-01 86.2% 80.0%
5046573 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.58 47.0 4.00e-01 89.4% 63.1%
3990496 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 38.0 4.41e-01 81.9% 91.4%
3504386 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.58 35.0 3.96e-01 85.1% 81.4%
3481201 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.57 49.0 3.89e-01 94.7% 90.3%
5073876 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.57 40.0 2.59e-01 73.4% 21.1%
3510894 844.1.1.1 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub 0.57 46.0 3.52e-01 89.4% 75.7%
4947567 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 40.0 2.59e-01 74.5% 21.1%
4985396 213.1.1.27 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.56 38.0 3.79e-01 76.6% 66.0%
5029795 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.56 40.0 2.70e-01 74.5% 27.5%
4992891 331.16.1.1 ↗ a+b two layers › TBP-like › TA0095-like › TA0095-like › DUF5611 0.55 42.0 4.21e-01 90.4% 78.0%
3800585 213.1.1.31 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.55 41.0 3.47e-01 79.8% 63.6%
4980820 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.55 44.0 3.64e-01 89.4% 49.4%
4932706 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.55 39.0 2.41e-01 74.5% 17.7%
3917386 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.54 49.0 3.99e-01 100.0% 98.9%
5029896 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 41.0 3.44e-01 85.1% 97.1%
4183868 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.53 36.0 3.88e-01 71.3% 94.9%
4683341 2484.1.1.12 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.53 42.0 3.33e-01 87.2% 68.5%
3281830 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 36.0 3.29e-01 72.3% 99.3%
4170432 4998.1.1.1 ↗ beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.52 46.0 4.17e-01 96.8% 80.0%
6353 331.11.1.1 ↗ a+b two layers › TBP-like › Rbstp2229 protein › Rbstp2229 protein › DUF1885 0.52 37.0 3.40e-01 81.9% 55.6%
4000094 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 37.0 3.29e-01 76.6% 70.3%
4229035 2484.1.1.12 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.51 41.0 3.25e-01 87.2% 69.0%
4978550 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 39.0 3.29e-01 81.9% 68.5%
3016757 213.1.1.7 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FemAB 0.51 39.0 3.25e-01 83.0% 61.8%
1346676 3347.1.1.1 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 0.51 45.0 4.31e-01 96.8% 88.1%
4065198 2484.1.1.12 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.51 46.0 3.03e-01 100.0% 98.2%
3877591 77.3.1.5 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN_DRC7 0.50 44.0 3.14e-01 96.8% 37.5%
3623943 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.50 33.0 3.54e-01 79.8% 82.7%