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MG592473.1__AUR87562.1__NVP1101O_151__00151

Bact-Vir

MG592473.1__AUR87562.1__NVP1101O_151__00151

Identity

Accession:
MG592473 ↗
Kingdom:
phage

Quality

64.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-32_48-129
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.78 57.0 4.81e-01 100.0% 47.4%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.76 54.0 5.27e-01 100.0% 67.5%
2vqeE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.74 32.0 4.08e-01 89.0% 68.8%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 42.0 4.54e-01 89.0% 69.5%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.69 64.0 5.65e-01 100.0% 75.0%
1y0hB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 38.0 4.00e-01 71.6% 59.2%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.69 63.0 5.54e-01 100.0% 77.5%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.67 50.0 5.35e-01 99.1% 90.5%
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 38.0 4.43e-01 88.1% 80.3%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 39.0 4.27e-01 89.0% 72.2%
3nrbB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 38.0 4.28e-01 87.2% 75.9%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 37.0 4.02e-01 93.6% 67.8%
2fbjH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 39.0 4.53e-01 89.0% 91.8%
3o1lB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 39.0 4.32e-01 89.0% 78.4%
3eniC00 2.50.10.10 Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A 0.61 50.0 3.53e-01 89.9% 34.6%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.60 26.0 3.64e-01 87.2% 83.0%
6efyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 37.0 3.89e-01 89.0% 68.4%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.59 46.0 4.61e-01 100.0% 79.6%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 37.0 4.01e-01 91.7% 75.3%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.59 52.0 4.96e-01 100.0% 95.4%
1cg2A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 39.0 3.98e-01 87.2% 69.1%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 39.0 3.77e-01 89.0% 60.7%
5wy8B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 41.0 4.13e-01 89.0% 72.3%
1mruA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 39.0 4.21e-01 100.0% 83.7%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.56 32.0 3.84e-01 74.3% 88.2%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.56 50.0 4.63e-01 100.0% 89.4%
2rb7A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 37.0 3.82e-01 90.8% 69.2%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.56 32.0 3.91e-01 74.3% 93.8%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 38.0 3.91e-01 71.6% 71.3%
1txkB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.88e-01 89.0% 68.7%
4q7aC02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.86e-01 90.8% 71.3%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.55 50.0 4.64e-01 100.0% 89.7%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 37.0 3.81e-01 92.7% 71.0%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 38.0 3.87e-01 96.3% 72.1%
3ct9A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.85e-01 72.5% 73.8%
1qzzA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 37.0 3.19e-01 100.0% 45.6%
3gb0A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 38.0 3.77e-01 89.9% 72.3%
1vs3A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.52 39.0 3.59e-01 78.9% 60.4%
3qw9B00 2.60.40.4100 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain 0.51 42.0 3.68e-01 89.0% 60.8%
3tx8A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 35.0 3.54e-01 71.6% 71.1%
1ekrA00 3.30.70.640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain 0.51 37.0 3.41e-01 75.2% 58.7%
3tekA00 3.30.470.50 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.51 41.0 3.85e-01 89.0% 84.2%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 37.0 3.65e-01 90.8% 71.6%
3pcoB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.50 33.0 3.49e-01 99.1% 76.6%
3bfmA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 41.0 3.52e-01 89.0% 61.5%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4059301 1.1.13.47 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.84 77.0 7.67e-01 100.0% 95.5%
3943681 1.1.13.47 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.83 78.0 6.93e-01 100.0% 94.0%
4957562 1.1.13.76 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF6046 0.82 74.0 7.38e-01 100.0% 93.6%
2475124 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 58.0 6.19e-01 99.1% 96.8%
3837951 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.73 38.0 4.17e-01 79.8% 61.1%
3164010 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.73 37.0 4.32e-01 74.3% 67.5%
3287506 304.8.1.22 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.73 37.0 4.02e-01 73.4% 56.8%
3604610 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 43.0 5.39e-01 84.4% 98.5%
4033372 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 54.0 5.42e-01 97.2% 78.2%
4947384 304.8.1.7 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C 0.71 36.0 4.10e-01 72.5% 63.5%
3387224 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.71 49.0 4.61e-01 100.0% 59.2%
4402979 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.71 36.0 4.27e-01 82.6% 70.7%
3971355 304.12.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C 0.70 38.0 4.26e-01 74.3% 67.1%
3265120 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.70 65.0 5.50e-01 100.0% 76.0%
4982153 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.70 65.0 4.77e-01 100.0% 45.9%
3969384 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.70 64.0 5.61e-01 100.0% 79.4%
3977123 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.69 64.0 5.60e-01 100.0% 76.9%
3388014 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.67 38.0 4.32e-01 86.2% 73.8%
4809346 1.1.13.57 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.65 48.0 5.33e-01 89.9% 98.8%
4226508 304.12.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C 0.64 39.0 4.31e-01 87.2% 76.5%
4982756 304.102.1.2 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.64 53.0 4.38e-01 88.1% 92.6%
3607823 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 43.0 4.44e-01 90.8% 71.4%
3934401 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 41.0 4.09e-01 88.1% 63.6%
3355161 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 40.0 4.27e-01 92.7% 72.6%
3512169 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 37.0 3.99e-01 92.7% 67.8%
4319369 304.8.1.1 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C 0.63 35.0 3.85e-01 86.2% 65.6%
4261744 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.62 56.0 5.35e-01 100.0% 92.8%
3284477 304.12.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C 0.62 37.0 4.04e-01 93.6% 74.1%
3970813 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.61 37.0 3.99e-01 88.1% 69.1%
4069303 304.153.1.1 a+b two layers › Alpha-beta plaits › Collagenase G catalytic helper subdomain › Collagenase G catalytic helper subdomain › ColG_sub 0.61 49.0 4.75e-01 100.0% 77.5%
4933189 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.61 41.0 4.33e-01 95.4% 77.9%
3839866 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.60 39.0 4.18e-01 84.4% 77.8%
5066768 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 41.0 4.19e-01 97.2% 72.4%
3492448 872.3.1.7 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_4 0.60 40.0 4.21e-01 74.3% 75.0%
3211296 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 40.0 3.98e-01 89.0% 65.2%
4545576 11.1.1.66 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MdoG 0.60 40.0 4.13e-01 89.9% 71.4%
3721769 304.8.1.22 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.60 34.0 3.55e-01 85.3% 59.0%
3517589 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 41.0 2.86e-01 87.2% 22.0%
3465961 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.58 46.0 3.69e-01 85.3% 50.5%
3614913 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.58 30.0 3.40e-01 89.0% 63.5%
4254454 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.57 45.0 3.49e-01 85.3% 50.2%
3265794 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 35.0 3.62e-01 89.0% 62.9%
4377299 304.18.1.0 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.57 37.0 3.76e-01 81.7% 66.7%
4599940 304.102.1.0 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.56 44.0 3.40e-01 86.2% 53.8%
4935602 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.56 40.0 3.88e-01 74.3% 68.3%
4521939 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.56 44.0 3.42e-01 86.2% 55.2%
3592320 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.55 40.0 3.73e-01 77.1% 67.1%
4097022 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.55 44.0 3.38e-01 87.2% 53.8%
4965450 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.55 38.0 3.87e-01 73.4% 71.8%
4201836 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.55 43.0 3.37e-01 86.2% 55.6%
3279708 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.54 38.0 3.78e-01 72.5% 71.3%
5035567 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.54 33.0 4.03e-01 79.8% 95.7%
4030972 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.54 49.0 4.75e-01 100.0% 95.0%
4163084 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.54 38.0 3.77e-01 72.5% 73.0%
3917015 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 3.83e-01 89.0% 66.2%
3971453 314.1.1.6 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.54 44.0 3.57e-01 87.2% 51.7%
5047867 314.1.1.6 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.54 45.0 3.60e-01 89.9% 63.3%
1320689 872.11.1.0 a+b two layers › Dodecin subunit-like › Hypothetical protein FTT_1539c › Hypothetical protein FTT_1539c 0.54 43.0 4.04e-01 86.2% 86.6%
3857454 246.3.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.53 38.0 2.51e-01 75.2% 68.5%
3361891 246.3.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.53 38.0 2.77e-01 75.2% 96.8%
3987654 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.53 38.0 2.94e-01 73.4% 100.0%
3532020 246.3.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.53 38.0 2.62e-01 75.2% 85.8%
2126271 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.53 36.0 3.62e-01 91.7% 67.8%
5048630 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.52 42.0 3.90e-01 89.9% 68.9%
4971865 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.52 40.0 3.91e-01 90.8% 74.2%
4961160 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.52 38.0 3.77e-01 89.9% 71.7%
4481559 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.51 40.0 3.84e-01 91.7% 70.8%
3496203 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.51 40.0 4.22e-01 98.2% 90.0%
3621732 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 37.0 3.80e-01 75.2% 79.0%
3605297 306.10.1.0 a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 0.51 39.0 3.74e-01 79.8% 98.4%
3583745 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 44.0 4.07e-01 98.2% 93.8%
4009790 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.50 39.0 2.93e-01 81.7% 87.5%