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MG592473.1__AUR87587.1__NVP1101O_176__00176

Bact-Vir

MG592473.1__AUR87587.1__NVP1101O_176__00176

Identity

Accession:
MG592473 ↗
Kingdom:
phage

Quality

67.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-86
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.73 64.0 5.42e-01 96.5% 62.6%
7jw2A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.71 38.0 2.79e-01 87.1% 20.5%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.67 56.0 4.70e-01 91.8% 71.0%
3wlvA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.66 55.0 3.80e-01 92.9% 65.7%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 48.0 3.84e-01 80.0% 89.3%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 53.0 4.31e-01 87.1% 91.3%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.64 54.0 4.47e-01 91.8% 71.4%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.63 44.0 3.83e-01 74.1% 97.8%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.62 55.0 3.92e-01 98.8% 78.4%
1lshA03 2.20.50.20 Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 0.62 53.0 5.12e-01 96.5% 96.9%
1ewfA02 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.61 53.0 3.80e-01 100.0% 53.3%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 37.0 3.42e-01 83.5% 46.5%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.60 54.0 5.01e-01 98.8% 79.2%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.60 53.0 4.23e-01 100.0% 75.1%
3e66A01 3.30.420.230 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Prp8 RNase H domain, palm region 0.60 41.0 3.32e-01 70.6% 87.6%
2petA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 43.0 3.84e-01 85.9% 55.7%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 45.0 3.84e-01 80.0% 88.7%
3e8tA00 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.59 51.0 3.88e-01 100.0% 75.5%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 49.0 4.51e-01 100.0% 70.2%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.58 48.0 3.82e-01 90.6% 90.2%
5da9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 48.0 3.22e-01 91.8% 38.0%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 43.0 3.87e-01 80.0% 95.2%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 51.0 4.22e-01 100.0% 94.9%
4bq6F00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.57 51.0 4.28e-01 100.0% 64.4%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 49.0 4.10e-01 94.1% 82.4%
1m6kA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 40.0 2.92e-01 74.1% 78.8%
2nq3A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 39.0 3.46e-01 75.3% 69.5%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 42.0 3.60e-01 81.2% 66.7%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.55 48.0 3.75e-01 100.0% 72.0%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 43.0 3.85e-01 87.1% 96.0%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 47.0 3.81e-01 100.0% 50.3%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.47e-01 76.5% 61.3%
4jf8A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.54 45.0 3.86e-01 94.1% 95.1%
3vx8A02 3.40.140.70 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain 0.54 41.0 3.41e-01 83.5% 59.8%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.54 44.0 3.88e-01 95.3% 95.6%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.89e-01 100.0% 29.5%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 43.0 3.57e-01 97.6% 49.1%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 28.0 3.17e-01 81.2% 68.2%
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.52 44.0 3.72e-01 100.0% 54.8%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.52 41.0 3.48e-01 90.6% 73.1%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.51e-01 78.8% 98.2%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.51 44.0 3.63e-01 100.0% 85.3%
3b7yA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 41.0 3.49e-01 89.4% 88.2%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 43.0 2.87e-01 100.0% 38.4%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3577514 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.72 65.0 4.22e-01 100.0% 24.9%
3991567 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.72 64.0 4.11e-01 100.0% 23.0%
3474675 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.71 64.0 4.22e-01 100.0% 35.0%
5052130 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.71 55.0 3.48e-01 82.4% 35.6%
3514632 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.71 63.0 4.09e-01 100.0% 27.4%
4960124 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.71 54.0 3.49e-01 80.0% 36.6%
3409721 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.70 61.0 4.14e-01 95.3% 31.5%
3664957 5084.5.1.57 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF28611 0.69 57.0 3.80e-01 96.5% 22.7%
3559952 71.2.1.4 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.68 62.0 4.44e-01 100.0% 51.2%
3434245 9.3.1.4 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › DUF2921_N 0.68 60.0 4.82e-01 100.0% 78.2%
4582509 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.67 57.0 4.17e-01 95.3% 49.8%
4403206 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.67 57.0 4.65e-01 91.8% 58.7%
3253869 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.67 59.0 3.89e-01 100.0% 25.1%
3829563 897.1.1.0 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.67 61.0 4.85e-01 100.0% 54.5%
4931487 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.67 38.0 3.35e-01 83.5% 37.6%
3056279 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.66 56.0 4.51e-01 91.8% 63.2%
4114942 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.66 60.0 4.71e-01 100.0% 52.0%
3452536 11.1.1.851 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26192 0.66 57.0 4.52e-01 92.9% 66.1%
3875809 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.64 56.0 4.47e-01 94.1% 64.8%
3223399 3369.1.1.0 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 0.64 57.0 4.31e-01 100.0% 67.1%
3467186 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 44.0 2.70e-01 70.6% 98.0%
5002462 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.64 36.0 3.14e-01 83.5% 34.8%
3422338 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.64 48.0 4.65e-01 80.0% 80.0%
3512269 79.1.1.16 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF1983 0.63 47.0 4.65e-01 78.8% 82.2%
4575618 883.1.1.3 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP 0.63 56.0 4.15e-01 97.6% 97.7%
3417002 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 56.0 5.00e-01 97.6% 90.0%
3703973 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.63 52.0 4.58e-01 91.8% 94.6%
3917310 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 37.0 4.12e-01 92.9% 75.4%
4022543 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.62 57.0 4.06e-01 98.8% 64.3%
3882550 11.1.1.851 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26192 0.62 52.0 3.98e-01 91.8% 49.2%
4523830 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.61 49.0 4.52e-01 87.1% 98.2%
3170663 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.60 50.0 3.45e-01 97.6% 88.7%
3809890 331.3.1.28 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 0.60 52.0 3.75e-01 92.9% 50.9%
3807674 331.3.1.28 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 0.59 50.0 3.72e-01 96.5% 35.3%
3621362 883.1.1.15 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.59 50.0 3.27e-01 100.0% 33.8%
5046983 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 43.0 2.77e-01 82.4% 15.9%
3357649 213.1.1.5 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › MOZ_SAS 0.58 49.0 3.92e-01 90.6% 75.8%
3735005 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.58 51.0 3.71e-01 96.5% 68.3%
4126991 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 38.0 3.79e-01 80.0% 65.6%
3793375 213.1.1.2 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N 0.57 47.0 3.90e-01 90.6% 84.0%
3790600 213.1.1.2 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N 0.57 47.0 3.78e-01 90.6% 76.4%
3691059 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.56 46.0 3.78e-01 94.1% 89.4%
3967619 244.3.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD 0.55 50.0 4.47e-01 100.0% 98.3%
3844624 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.55 48.0 3.55e-01 96.5% 50.5%
3665166 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 43.0 2.88e-01 84.7% 27.6%
3924310 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 3.08e-01 100.0% 41.1%
4593266 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 38.0 3.95e-01 96.5% 85.3%
3445177 9.1.1.10 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › VDE 0.53 46.0 3.64e-01 100.0% 69.5%
3181187 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.53 43.0 2.55e-01 91.8% 64.4%
3781730 5.1.11.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Utp8_b_propeller 0.52 45.0 3.03e-01 100.0% 34.3%
3306744 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 48.0 2.92e-01 100.0% 86.4%
3460112 9.2.1.4 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N 0.52 45.0 3.49e-01 100.0% 56.6%
3467280 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 47.0 2.88e-01 100.0% 86.1%
3062082 5.1.3.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.52 45.0 2.92e-01 100.0% 30.5%
3276560 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.52 40.0 3.86e-01 84.7% 85.0%
None 0.52 47.0 2.90e-01 100.0% 97.7%