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MG592476.1__AUR87843.1__NVP1104O_93__00093

Bact-Vir

MG592476.1__AUR87843.1__NVP1104O_93__00093

Identity

Accession:
MG592476 ↗
Kingdom:
phage

Quality

55.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.104.O._10N.286.49.A12

TaxID: 1881324

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 295-345_464-520
PDB
D2 high residues 353-459
PDB
D3 medium residues 22-62
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6igmG01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.77 32.0 2.53e-01 85.4% 19.2%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.71 49.0 2.92e-01 100.0% 9.3%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 41.0 3.47e-01 73.2% 35.6%
2o1mA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.64 41.0 3.05e-01 95.1% 24.3%
1s5lC02 1.10.10.670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › photosystem ii from thermosynechococcus elongatus 0.61 37.0 2.85e-01 100.0% 22.1%
2w61A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.61 45.0 2.77e-01 87.8% 19.2%
2i4lA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 46.0 2.74e-01 87.8% 14.4%
4y93A03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.60 35.0 2.30e-01 100.0% 11.2%
1jr7A00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.60 47.0 2.81e-01 100.0% 11.8%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.58 50.0 3.68e-01 100.0% 65.7%
1sqwA01 3.10.450.220 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 3.28e-01 78.0% 58.1%
8gr2A01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 37.0 2.46e-01 85.4% 14.9%
2oycA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 41.0 3.08e-01 87.8% 45.1%
5nmxB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 36.0 2.79e-01 70.7% 94.6%
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.53 38.0 2.86e-01 82.9% 84.7%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 34.0 2.31e-01 90.2% 19.9%
4c2mA04 3.30.1490.180 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase ii 0.51 39.0 3.22e-01 82.9% 50.6%
4wz2C00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 36.0 3.20e-01 82.9% 90.5%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.51 35.0 3.22e-01 100.0% 55.6%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.51 41.0 3.61e-01 97.6% 79.1%
3sigA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.51 36.0 2.27e-01 87.8% 12.5%
4ojuA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.51 39.0 2.88e-01 100.0% 66.9%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4978956 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.77 54.0 3.97e-01 78.0% 29.5%
4939370 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 56.0 4.11e-01 78.0% 32.0%
4947701 101.1.2.882 ↗ alpha arrays › HTH › HTH › winged helix domain › FeoA 0.70 48.0 3.64e-01 78.0% 29.0%
5055185 4120.1.1.0 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.70 38.0 3.37e-01 100.0% 35.0%
3887830 193.1.1.33 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH_CAMSAP2_N 0.66 45.0 3.13e-01 70.7% 53.8%
3183471 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.66 39.0 2.26e-01 100.0% 7.1%
3588934 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.64 51.0 4.41e-01 90.2% 81.5%
3785787 2002.1.1.110 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_72 0.61 44.0 2.67e-01 85.4% 17.1%
3614292 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.61 37.0 2.43e-01 100.0% 12.4%
3608522 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 2.38e-01 78.0% 34.1%
3546963 193.1.1.33 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH_CAMSAP2_N 0.59 44.0 3.38e-01 82.9% 72.0%
3382543 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 3.61e-01 90.2% 77.8%
3221205 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.57 43.0 2.57e-01 80.5% 17.1%
3244252 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.57 41.0 2.48e-01 80.5% 16.9%
3722679 3358.1.1.0 ↗ few secondary structure elements › Zn3Cys9 preSET domain-related › Zn3Cys9 preSET domain-related › Zn3Cys9 preSET domain-related 0.57 40.0 3.44e-01 75.6% 65.7%
3238272 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.56 40.0 2.46e-01 80.5% 17.8%
3212962 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.56 40.0 2.43e-01 80.5% 17.1%
3238987 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.56 41.0 2.52e-01 87.8% 18.5%
3219796 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.55 41.0 2.46e-01 78.0% 16.5%
5023621 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.55 44.0 3.47e-01 92.7% 54.7%
5366 304.48.1.15 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 0.54 38.0 2.21e-01 75.6% 9.3%
4226425 146.1.1.1 ↗ alpha arrays › Di-copper centre-containing domain › Di-copper centre-containing domain › Di-copper centre-containing domain › Tyrosinase 0.54 45.0 2.62e-01 100.0% 10.5%
4945146 242.2.1.0 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like 0.54 37.0 3.51e-01 85.4% 60.0%
3218566 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.53 38.0 2.38e-01 87.8% 16.8%
3351350 206.1.1.74 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.53 39.0 2.39e-01 78.0% 56.8%
3245428 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.53 37.0 3.79e-01 82.9% 75.0%
3616108 109.3.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank 0.53 41.0 2.66e-01 100.0% 34.6%
3217134 5001.1.1.153 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srd, 7TM_GPCR_Str 0.53 40.0 2.44e-01 85.4% 17.6%
4288812 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.53 39.0 2.41e-01 82.9% 17.0%
3645022 2005.1.1.43 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd 0.53 35.0 2.45e-01 70.7% 80.6%
4996508 243.6.1.5 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › UPF0113_N 0.53 44.0 3.43e-01 100.0% 57.0%
5071554 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 40.0 2.66e-01 90.2% 17.6%
None — 0.53 44.0 2.47e-01 97.6% 12.2%
3725182 2002.1.1.58 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_39 0.53 38.0 2.31e-01 80.5% 29.3%
3823533 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.53 38.0 2.28e-01 78.0% 49.3%
3195586 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.52 35.0 1.99e-01 70.7% 15.6%
4928178 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.51 41.0 2.88e-01 100.0% 58.2%
3183367 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.51 40.0 2.45e-01 87.8% 54.8%
3927729 7568.1.1.0 ↗ a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.50 39.0 2.99e-01 100.0% 58.3%
D4 medium residues 66-119
PDB
Domain cluster: rep: MG592459.1__AUR86380.1__NVP1084O_173__00173__D69-126
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oj5A02 2.10.10.80 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.77 69.0 6.27e-01 100.0% 81.7%
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.72 58.0 4.81e-01 92.6% 50.5%
4h3sA03 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.57 43.0 3.39e-01 81.5% 54.5%
3h09A03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 46.0 4.05e-01 100.0% 69.3%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 36.0 3.84e-01 81.5% 81.8%
2mtvA00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.54 45.0 3.32e-01 100.0% 60.3%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2442382 3856.1.1.1 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › Tail_spike_N 0.75 66.0 4.46e-01 100.0% 29.7%
3992248 391.1.2.9 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 0.69 41.0 4.30e-01 81.5% 65.3%
4233290 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.67 51.0 5.24e-01 98.1% 94.0%
3975892 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.66 54.0 5.42e-01 92.6% 98.2%
3519410 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.61 38.0 4.20e-01 81.5% 87.2%
4932987 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.58 32.0 3.64e-01 70.4% 77.1%
4930179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 33.0 3.32e-01 77.8% 52.7%
3502375 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.55 40.0 4.25e-01 81.5% 91.1%
3963528 3312.1.1.2 ↗ a+b two layers › Domain 2 in immunoglobulin A protease › Domain 2 in immunoglobulin A protease › Domain 2 in immunoglobulin A protease › IgA0_D2 0.55 45.0 3.98e-01 100.0% 71.1%
D5 medium residues 163-245
PDB