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MG592484.1__AUR88234.1__NVP1111A_40__00040
Bact-VirMG592484.1__AUR88234.1__NVP1111A_40__00040
Identity
- Accession:
- MG592484 ↗
- Kingdom:
- phage
Quality
92.9
mean pLDDT
Taxonomy
TaxID: 1881328
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-58
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.65 | 57.0 | 4.64e-01 | 100.0% | 57.4% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.62 | 52.0 | 3.93e-01 | 100.0% | 48.7% |
| 6kwzA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.62 | 46.0 | 3.93e-01 | 100.0% | 48.0% |
| 2xf1A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.62 | 50.0 | 4.05e-01 | 100.0% | 45.1% |
| 1kshB00 | 2.70.50.40 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit | 0.61 | 54.0 | 4.02e-01 | 100.0% | 44.4% |
| 1l3iA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 41.0 | 2.95e-01 | 73.2% | 84.3% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.60 | 44.0 | 4.19e-01 | 83.9% | 100.0% |
| 4c23B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 49.0 | 3.38e-01 | 100.0% | 92.3% |
| 5cm2Z00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 47.0 | 3.35e-01 | 91.1% | 92.4% |
| 2czrA02 | 3.90.79.30 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain | 0.58 | 43.0 | 3.35e-01 | 78.6% | 68.3% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.58 | 46.0 | 3.37e-01 | 94.6% | 51.1% |
| 3r5dA01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 46.0 | 3.63e-01 | 92.9% | 74.4% |
| 5xrwC00 | 2.30.330.10 | Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like | 0.57 | 34.0 | 3.07e-01 | 89.3% | 41.0% |
| 1lvbA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 45.0 | 3.82e-01 | 100.0% | 55.6% |
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.55 | 38.0 | 2.93e-01 | 73.2% | 45.0% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.54 | 43.0 | 3.23e-01 | 96.4% | 57.5% |
| 2pi2D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 35.0 | 2.83e-01 | 100.0% | 30.9% |
| 2jwyA01 | 2.60.40.1620 | Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like | 0.54 | 41.0 | 3.26e-01 | 89.3% | 43.0% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.54 | 38.0 | 2.93e-01 | 75.0% | 44.3% |
| 3qjlA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 45.0 | 3.55e-01 | 96.4% | 86.6% |
| 8b38A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 40.0 | 2.84e-01 | 91.1% | 76.1% |
| 6vtmB00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 44.0 | 3.76e-01 | 98.2% | 94.8% |
| 3holA01 | 2.40.128.250 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 38.0 | 3.50e-01 | 87.5% | 95.2% |
| 6mfcA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 42.0 | 3.01e-01 | 98.2% | 70.8% |
| 5k9nB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 41.0 | 2.93e-01 | 100.0% | 67.9% |
| 1b1zA02 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 40.0 | 3.24e-01 | 100.0% | 51.5% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032409 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.85 | 77.0 | 6.94e-01 | 100.0% | 97.3% |
| 4210460 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.73 | 60.0 | 4.64e-01 | 89.3% | 95.8% |
| 4967498 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.73 | 62.0 | 3.93e-01 | 94.6% | 20.4% |
| 3394885 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.72 | 64.0 | 5.11e-01 | 100.0% | 61.8% |
| 4519565 | 4139.1.1.0 ↗ | a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like | 0.70 | 60.0 | 4.72e-01 | 100.0% | 63.2% |
| 4375028 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.69 | 55.0 | 4.28e-01 | 89.3% | 94.4% |
| 4260704 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.68 | 50.0 | 4.31e-01 | 100.0% | 48.4% |
| 3352760 | 321.1.1.1 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C | 0.67 | 57.0 | 3.56e-01 | 100.0% | 63.2% |
| 4680886 | 69.1.1.14 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint_2 | 0.67 | 57.0 | 4.09e-01 | 96.4% | 39.4% |
| 5061537 | 871.1.1.1 ↗ | a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 | 0.66 | 56.0 | 3.90e-01 | 100.0% | 56.4% |
| 4000011 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 58.0 | 4.73e-01 | 100.0% | 91.4% |
| 4623982 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.64 | 46.0 | 2.95e-01 | 75.0% | 99.3% |
| 3623120 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 55.0 | 4.13e-01 | 100.0% | 64.0% |
| 5026837 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 55.0 | 4.75e-01 | 100.0% | 61.1% |
| 3795522 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.64 | 55.0 | 4.23e-01 | 100.0% | 68.9% |
| 3689024 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 48.0 | 3.80e-01 | 89.3% | 38.5% |
| 3199763 | 220.1.1.202 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N | 0.61 | 52.0 | 4.04e-01 | 96.4% | 47.2% |
| 3925634 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.61 | 47.0 | 4.44e-01 | 87.5% | 88.6% |
| 4011479 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 48.0 | 3.65e-01 | 91.1% | 69.3% |
| 3902712 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.59 | 50.0 | 3.48e-01 | 100.0% | 33.7% |
| 4025617 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 52.0 | 3.78e-01 | 100.0% | 61.3% |
| 3585568 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.59 | 52.0 | 3.68e-01 | 100.0% | 35.3% |
| 3722266 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 45.0 | 3.61e-01 | 91.1% | 41.6% |
| 4144303 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.57 | 50.0 | 3.74e-01 | 100.0% | 42.8% |
| 3984933 | 252.2.1.5 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 | 0.57 | 40.0 | 3.48e-01 | 75.0% | 44.4% |
| 3927107 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.56 | 49.0 | 3.82e-01 | 100.0% | 48.8% |
| 3635213 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 43.0 | 3.32e-01 | 89.3% | 46.2% |
| 3231215 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.55 | 48.0 | 3.76e-01 | 100.0% | 54.4% |
| 4050578 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.54 | 44.0 | 3.60e-01 | 100.0% | 63.2% |
| 4088630 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.54 | 45.0 | 3.14e-01 | 100.0% | 42.8% |
| 4008896 | 11.1.1.1286 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27224 | 0.53 | 43.0 | 3.32e-01 | 100.0% | 40.0% |
| 3619736 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.52 | 44.0 | 3.52e-01 | 100.0% | 46.4% |
| 3734354 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.52 | 34.0 | 2.65e-01 | 100.0% | 27.1% |
| 5052471 | 212.1.1.3 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N | 0.52 | 43.0 | 2.95e-01 | 98.2% | 39.6% |
| 3608074 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 42.0 | 3.44e-01 | 100.0% | 68.3% |
| 3512889 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 33.0 | 2.64e-01 | 100.0% | 28.1% |
| 3924083 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.51 | 40.0 | 3.10e-01 | 100.0% | 52.9% |
| None | — | 0.51 | 34.0 | 2.55e-01 | 71.4% | 24.1% | |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.51 | 38.0 | 3.79e-01 | 87.5% | 91.5% |
| 3412221 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 33.0 | 2.67e-01 | 100.0% | 30.4% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.50 | 39.0 | 3.68e-01 | 87.5% | 70.0% |
| 3925395 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 33.0 | 2.66e-01 | 71.4% | 29.3% |
| 3490309 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 34.0 | 2.68e-01 | 71.4% | 30.4% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.50 | 37.0 | 3.70e-01 | 87.5% | 88.3% |