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MG592486.1__AUR88364.1__NVP1112O_46__00046

Bact-Vir

MG592486.1__AUR88364.1__NVP1112O_46__00046

Identity

Accession:
MG592486 ↗
Kingdom:
phage

Quality

89.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.112.O._10N.286.46.B11

TaxID: 1881330

Cluster

View cluster (49 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-110
PDB
Domain cluster: rep: KY940711.1__ARQ95339.1__X__00107__D8-116
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10934.15 best Sheath_initiator 40.9 2.40e-10 92.1% 72.1%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.86 81.0 7.41e-01 100.0% 86.5%
1tluA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.71 49.0 4.49e-01 100.0% 54.7%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.69 33.0 3.64e-01 98.9% 55.4%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.68 47.0 3.90e-01 70.8% 65.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 41.0 4.79e-01 89.9% 87.3%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 42.0 4.73e-01 75.3% 86.4%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 41.0 4.62e-01 94.4% 84.1%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 39.0 4.52e-01 73.0% 87.1%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.64 58.0 5.17e-01 100.0% 78.4%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 36.0 3.55e-01 100.0% 53.1%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 32.0 2.98e-01 100.0% 37.7%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 30.0 3.38e-01 93.3% 58.2%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 37.0 4.23e-01 73.0% 87.3%
3nuhB03 3.10.20.690 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 47.0 4.73e-01 100.0% 87.6%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 44.0 3.62e-01 86.5% 43.4%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 46.0 3.65e-01 84.3% 55.7%
1oj5A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 45.0 4.29e-01 89.9% 72.4%
2xsgB01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 51.0 3.59e-01 100.0% 60.4%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.55 50.0 4.04e-01 98.9% 58.5%
4xq7A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 48.0 4.06e-01 100.0% 74.4%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 31.0 3.56e-01 78.7% 83.9%
1o20A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.54 39.0 2.84e-01 76.4% 95.1%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 38.0 3.12e-01 75.3% 87.6%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 46.0 3.24e-01 100.0% 85.4%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 33.0 3.15e-01 100.0% 52.9%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.53 40.0 3.27e-01 83.1% 80.7%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 33.0 3.21e-01 100.0% 56.1%
3vynA01 2.60.40.3780 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 4.62e-01 100.0% 95.4%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 37.0 2.52e-01 76.4% 29.1%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 43.0 3.38e-01 96.6% 89.2%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.51 34.0 3.05e-01 88.8% 44.9%
7z0sE01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.51 42.0 3.87e-01 100.0% 69.7%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947887 283.2.1.9 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Sheath_initiator 0.96 91.0 8.17e-01 98.9% 77.4%
4988107 283.2.1.9 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Sheath_initiator 0.86 80.0 7.36e-01 100.0% 83.6%
2796410 283.2.1.9 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Sheath_initiator 0.85 75.0 6.89e-01 93.3% 75.5%
3948020 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.84 78.0 7.23e-01 100.0% 87.3%
3941521 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.84 77.0 7.10e-01 98.9% 78.8%
3966072 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.81 74.0 6.89e-01 100.0% 87.0%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 42.0 4.80e-01 89.9% 87.7%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 41.0 4.69e-01 73.0% 84.6%
3385523 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 32.0 2.98e-01 100.0% 36.4%
4238204 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.66 34.0 3.23e-01 100.0% 41.9%
4524363 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 40.0 4.58e-01 73.0% 84.6%
3403496 283.1.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.65 58.0 4.18e-01 100.0% 51.6%
4032678 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.65 34.0 3.28e-01 100.0% 44.0%
4292289 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 39.0 4.49e-01 74.2% 84.6%
4104219 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 40.0 4.56e-01 74.2% 86.2%
4975879 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 33.0 3.08e-01 100.0% 39.1%
3990098 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.63 33.0 3.07e-01 100.0% 40.0%
3841163 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.61 52.0 5.24e-01 100.0% 92.2%
4642580 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 32.0 3.04e-01 100.0% 41.9%
4680169 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 32.0 3.03e-01 100.0% 41.9%
4345080 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 37.0 4.18e-01 74.2% 84.6%
3387410 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 34.0 3.17e-01 100.0% 46.1%
5057108 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 35.0 3.22e-01 100.0% 47.8%
5062352 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 35.0 3.41e-01 100.0% 55.0%
4528707 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 35.0 3.24e-01 100.0% 49.1%
5020459 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 35.0 3.40e-01 100.0% 55.6%
4102465 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 31.0 3.02e-01 100.0% 45.2%
4099166 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 35.0 3.23e-01 100.0% 50.0%
4379563 375.1.1.289 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.56 28.0 3.57e-01 97.8% 88.9%
5004108 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 35.0 3.35e-01 100.0% 55.0%
5081845 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 34.0 3.34e-01 100.0% 55.0%
4982873 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 35.0 3.32e-01 100.0% 53.3%
4974920 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.56 34.0 3.33e-01 100.0% 55.0%
3959920 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 34.0 3.14e-01 100.0% 47.8%
4268775 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.56 48.0 4.30e-01 94.4% 73.6%
4240105 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.55 49.0 4.50e-01 98.9% 81.7%
4985272 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 34.0 3.25e-01 100.0% 52.4%
5066760 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.55 47.0 4.22e-01 94.4% 74.2%
4948168 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 34.0 3.23e-01 100.0% 50.9%
5050059 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 34.0 3.16e-01 100.0% 48.7%
4609098 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.55 47.0 4.12e-01 95.5% 68.9%
4931879 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.55 34.0 3.29e-01 100.0% 55.0%
4564797 2.1.1.123 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 0.55 34.0 3.08e-01 100.0% 45.8%
3335092 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.55 29.0 3.21e-01 100.0% 62.9%
4956007 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.55 36.0 3.40e-01 100.0% 56.2%
4304505 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.54 48.0 4.29e-01 100.0% 74.6%
4478350 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.54 37.0 3.38e-01 77.5% 52.5%
4393122 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.54 50.0 4.42e-01 100.0% 75.2%
4528679 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.54 47.0 4.15e-01 98.9% 68.9%
5020457 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 34.0 3.16e-01 100.0% 50.9%
3603253 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 33.0 3.16e-01 100.0% 52.4%
4391625 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.54 49.0 4.54e-01 98.9% 84.5%
4945684 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.53 33.0 3.09e-01 100.0% 48.7%
4954798 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.53 47.0 4.24e-01 98.9% 74.8%
4393617 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.53 45.0 4.04e-01 95.5% 78.5%
4269457 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.53 47.0 4.14e-01 100.0% 71.6%
5016163 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 34.0 3.17e-01 100.0% 53.6%
5036292 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 33.0 3.07e-01 100.0% 50.9%
4984691 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.52 45.0 4.15e-01 98.9% 83.3%
4975882 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 32.0 3.05e-01 100.0% 50.9%