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MG592486.1__AUR88382.1__NVP1112O_64__00064
Bact-VirMG592486.1__AUR88382.1__NVP1112O_64__00064
Identity
- Accession:
- MG592486 ↗
- Kingdom:
- phage
Quality
81.6
mean pLDDT
Taxonomy
TaxID: 1881330
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-43
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2z1cB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 58.0 | 4.95e-01 | 100.0% | 91.9% |
| 4khbD02 | 2.30.29.220 | Mainly Beta › Roll › PH-domain like › Structure-specific recognition protein (SSRP1) | 0.66 | 50.0 | 4.03e-01 | 83.3% | 77.8% |
| 2kcwA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.65 | 44.0 | 3.03e-01 | 100.0% | 20.4% |
| 3hz4A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 52.0 | 3.90e-01 | 97.6% | 75.8% |
| 2lleA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 48.0 | 3.05e-01 | 88.1% | 16.7% |
| 3g7sA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.63 | 51.0 | 2.96e-01 | 92.9% | 56.4% |
| 4n06A01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.62 | 51.0 | 4.19e-01 | 95.2% | 74.4% |
| 5e7qA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.61 | 51.0 | 2.93e-01 | 92.9% | 53.0% |
| 4wd1A01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.61 | 48.0 | 2.83e-01 | 92.9% | 62.8% |
| 5kmpB00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.61 | 50.0 | 2.92e-01 | 95.2% | 45.8% |
| 4s39A02 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.60 | 50.0 | 3.74e-01 | 97.6% | 49.1% |
| 4hasA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.60 | 47.0 | 3.74e-01 | 97.6% | 49.0% |
| 3df7A02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.60 | 53.0 | 3.66e-01 | 100.0% | 38.7% |
| 6jyxA01 | 2.10.270.20 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › | 0.60 | 42.0 | 3.12e-01 | 78.6% | 66.9% |
| 4w8oB00 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.60 | 48.0 | 2.78e-01 | 92.9% | 56.2% |
| 3pnnA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.59 | 51.0 | 3.08e-01 | 100.0% | 45.2% |
| 5ddtA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.59 | 48.0 | 3.05e-01 | 92.9% | 52.6% |
| 1e2tA02 | 3.30.1120.150 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.59 | 44.0 | 3.65e-01 | 88.1% | 46.5% |
| 1dhkB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 49.0 | 3.20e-01 | 97.6% | 54.9% |
| 1wxcB01 | 3.30.1880.10 | Alpha Beta › 2-Layer Sandwich › protein ne1242 fold › protein ne1242 domain like | 0.59 | 44.0 | 3.93e-01 | 83.3% | 72.6% |
| 2ra9A02 | 2.30.270.10 | Mainly Beta › Roll › duf1285 protein fold › duf1285 protein | 0.58 | 43.0 | 3.74e-01 | 92.9% | 49.3% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.58 | 46.0 | 3.01e-01 | 85.7% | 20.5% |
| 1o22A00 | 3.90.1000.10 | Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 | 0.58 | 47.0 | 3.30e-01 | 95.2% | 61.1% |
| 1iv8A02 | 3.30.1590.10 | Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 | 0.57 | 39.0 | 2.94e-01 | 73.8% | 28.8% |
| 3fogA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.57 | 49.0 | 3.66e-01 | 95.2% | 67.6% |
| 5zx8A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.57 | 49.0 | 3.21e-01 | 97.6% | 79.0% |
| 3c1dB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 47.0 | 4.13e-01 | 95.2% | 83.9% |
| 3orqA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 45.0 | 2.96e-01 | 100.0% | 81.0% |
| 4mybA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.55 | 47.0 | 3.01e-01 | 97.6% | 52.5% |
| 1zbsA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 40.0 | 3.34e-01 | 92.9% | 90.6% |
| 5ngyA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.54 | 38.0 | 3.04e-01 | 78.6% | 76.9% |
| 7x3hA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 47.0 | 3.41e-01 | 100.0% | 66.4% |
| 2w5qA01 | 3.30.1120.170 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.53 | 45.0 | 3.54e-01 | 100.0% | 55.9% |
| 6ptrB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 37.0 | 2.81e-01 | 81.0% | 42.5% |
| 1nztA01 | 3.30.230.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › lpxc deacetylase, domain 1 | 0.51 | 41.0 | 3.11e-01 | 95.2% | 64.7% |
| 1gwcA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 39.0 | 3.35e-01 | 95.2% | 97.5% |
| 3ifuA01 | 4.10.80.390 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › | 0.50 | 38.0 | 3.70e-01 | 92.9% | 84.3% |
| 3mpxA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 36.0 | 2.99e-01 | 88.1% | 42.3% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2897753 | 220.1.1.10 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog | 0.72 | 51.0 | 4.16e-01 | 76.2% | 84.4% |
| 4520401 | 2.14.1.1 ↗ | beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC | 0.71 | 61.0 | 4.80e-01 | 100.0% | 72.6% |
| 3236050 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.69 | 48.0 | 3.54e-01 | 73.8% | 35.5% |
| 3235525 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.68 | 58.0 | 3.73e-01 | 100.0% | 36.0% |
| 4826872 | 2010.1.1.4 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › FakA-like_C | 0.68 | 56.0 | 4.26e-01 | 95.2% | 82.5% |
| 3423399 | 5.3.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop | 0.67 | 51.0 | 3.84e-01 | 81.0% | 89.5% |
| 3297410 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 52.0 | 4.40e-01 | 85.7% | 63.8% |
| 3386489 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.65 | 51.0 | 3.52e-01 | 100.0% | 23.5% |
| 4878265 | 702.1.1.4 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack | 0.64 | 48.0 | 3.49e-01 | 83.3% | 73.7% |
| 4484289 | 633.23.1.9 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 | 0.63 | 52.0 | 3.33e-01 | 90.5% | 46.8% |
| 3270686 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.62 | 43.0 | 3.53e-01 | 73.8% | 77.5% |
| 4033493 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.62 | 45.0 | 4.25e-01 | 92.9% | 63.6% |
| 3281671 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.62 | 47.0 | 4.50e-01 | 83.3% | 84.0% |
| 3990000 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.62 | 44.0 | 4.17e-01 | 85.7% | 61.8% |
| 2524015 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.62 | 51.0 | 4.02e-01 | 92.9% | 96.6% |
| 3236787 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.62 | 51.0 | 3.73e-01 | 100.0% | 33.8% |
| 4251998 | 296.1.1.3 ↗ | a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 | 0.62 | 47.0 | 3.62e-01 | 83.3% | 40.0% |
| 5080196 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.61 | 51.0 | 3.20e-01 | 97.6% | 17.7% |
| 3454770 | 109.4.1.621 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 | 0.61 | 49.0 | 2.94e-01 | 88.1% | 26.4% |
| 4990890 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.61 | 44.0 | 3.12e-01 | 90.5% | 22.6% |
| 4583884 | 296.1.1.3 ↗ | a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 | 0.60 | 51.0 | 3.77e-01 | 100.0% | 47.2% |
| 3927790 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.60 | 43.0 | 4.24e-01 | 85.7% | 73.3% |
| 4126797 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.59 | 42.0 | 3.96e-01 | 92.9% | 58.3% |
| 4259848 | 7516.1.1.5 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › IspD | 0.59 | 46.0 | 2.94e-01 | 88.1% | 34.8% |
| 3535695 | 1021.1.1.2 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD | 0.59 | 47.0 | 3.80e-01 | 100.0% | 44.2% |
| 4973040 | 3407.1.1.0 ↗ | mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.58 | 52.0 | 4.09e-01 | 100.0% | 54.1% |
| 3311132 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 44.0 | 3.49e-01 | 83.3% | 49.4% |
| 1413813 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.58 | 40.0 | 3.85e-01 | 85.7% | 61.8% |
| 3461757 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.57 | 45.0 | 3.65e-01 | 100.0% | 51.5% |
| 4351809 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.57 | 41.0 | 3.81e-01 | 92.9% | 58.3% |
| 4930200 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.56 | 43.0 | 3.12e-01 | 88.1% | 43.8% |
| 4929483 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.56 | 48.0 | 3.52e-01 | 100.0% | 65.8% |
| 4276957 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.56 | 39.0 | 3.73e-01 | 83.3% | 61.8% |
| 3586103 | 2004.1.1.435 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_ATPase | 0.55 | 44.0 | 3.01e-01 | 90.5% | 66.9% |
| 4443103 | 296.1.1.3 ↗ | a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 | 0.55 | 45.0 | 3.41e-01 | 100.0% | 36.4% |
| 5059446 | 241.7.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N | 0.55 | 40.0 | 3.15e-01 | 83.3% | 62.0% |
| 3298595 | 10.1.1.11 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 | 0.54 | 48.0 | 3.20e-01 | 100.0% | 40.6% |
| 4262261 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.53 | 37.0 | 3.58e-01 | 92.9% | 63.6% |
| 4235021 | 386.1.1.64 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_12 | 0.53 | 46.0 | 3.82e-01 | 100.0% | 64.0% |
| 5074749 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 35.0 | 3.18e-01 | 76.2% | 44.3% |
| 3973146 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.53 | 36.0 | 3.49e-01 | 73.8% | 64.0% |
| 5016928 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.53 | 42.0 | 2.73e-01 | 92.9% | 52.3% |
| 5015831 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.52 | 39.0 | 2.90e-01 | 88.1% | 51.9% |
| 4086202 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.51 | 45.0 | 3.88e-01 | 97.6% | 81.5% |
| 3752690 | 386.1.1.66 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Spt46 | 0.51 | 39.0 | 3.69e-01 | 90.5% | 87.0% |
| None | — | 0.50 | 41.0 | 2.69e-01 | 100.0% | 54.7% |