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MG592495.1__AUR89035.1__NVP1121O_007__00007

Bact-Vir

MG592495.1__AUR89035.1__NVP1121O_007__00007

Identity

Accession:
MG592495 ↗
Kingdom:
phage

Quality

94.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.121.O._10N.286.46.C4

TaxID: 2070726

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-57
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.79 66.0 6.14e-01 100.0% 73.9%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 59.0 5.74e-01 100.0% 77.8%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.74 53.0 5.57e-01 100.0% 91.7%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 65.0 6.40e-01 100.0% 93.3%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 65.0 5.05e-01 100.0% 47.1%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 62.0 5.70e-01 100.0% 74.3%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 49.0 5.28e-01 100.0% 89.1%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 58.0 5.79e-01 100.0% 89.5%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 63.0 6.03e-01 100.0% 92.2%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 60.0 5.46e-01 100.0% 71.8%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 61.0 5.86e-01 100.0% 96.9%
4da2A01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 49.0 4.48e-01 78.6% 87.3%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 49.0 4.42e-01 78.6% 91.3%
1g2bA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 46.0 4.46e-01 75.0% 66.1%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 54.0 4.96e-01 100.0% 82.9%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.62 53.0 5.16e-01 100.0% 98.4%
2k4yA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.62 52.0 4.63e-01 100.0% 74.4%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 42.0 3.73e-01 71.4% 93.9%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 51.0 3.83e-01 92.9% 81.9%
1fc6A02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 44.0 3.84e-01 85.7% 77.2%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 3.92e-01 100.0% 72.1%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 2.88e-01 96.4% 23.3%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 4.19e-01 100.0% 83.3%
4izxA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 45.0 3.47e-01 92.9% 97.8%
4pkfB00 4.10.490.20 Few Secondary Structures › Irregular › High-Potential Iron-Sulfur Protein; Chain A › 0.55 43.0 4.05e-01 87.5% 87.0%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.56e-01 85.7% 83.0%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.68e-01 100.0% 86.1%
5tz6B02 3.10.129.120 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.53 42.0 3.17e-01 92.9% 68.8%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.53 42.0 3.73e-01 100.0% 60.2%
1qxmA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 43.0 3.32e-01 98.2% 98.6%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.52 39.0 3.85e-01 100.0% 77.3%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.52 38.0 3.54e-01 87.5% 65.4%
3exzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 39.0 3.07e-01 91.1% 88.4%
3kh8A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 39.0 3.13e-01 89.3% 85.7%
4lqbA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 36.0 2.83e-01 92.9% 33.8%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4654307 2.1.1.73 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.84 58.0 5.32e-01 71.4% 97.1%
4367301 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 63.0 6.39e-01 100.0% 87.3%
4508412 4.1.1.437 ↗ beta barrels › SH3 › SH3 › SH3 › PF29224 0.79 64.0 6.28e-01 100.0% 83.3%
3955235 4.1.1.183 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4926 0.78 68.0 6.09e-01 100.0% 68.8%
3483363 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 64.0 6.10e-01 100.0% 78.5%
3216019 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 66.0 6.36e-01 100.0% 95.4%
4046344 2.1.1.73 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.74 51.0 4.73e-01 71.4% 97.1%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.74 64.0 5.95e-01 100.0% 77.1%
3589606 4.1.1.109 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_13 0.73 66.0 6.14e-01 100.0% 84.3%
3793311 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 65.0 6.36e-01 100.0% 96.7%
4347063 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.73 66.0 4.90e-01 100.0% 68.9%
3931715 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 63.0 5.30e-01 100.0% 96.0%
3419491 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 59.0 5.79e-01 100.0% 85.0%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 63.0 6.03e-01 98.2% 93.8%
1746358 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.14e-01 100.0% 68.5%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 63.0 6.22e-01 100.0% 93.3%
3385654 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 62.0 4.86e-01 98.2% 64.2%
4284118 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 59.0 5.42e-01 96.4% 70.7%
513 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 63.0 5.89e-01 100.0% 91.3%
3495904 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.98e-01 100.0% 98.5%
3243188 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 63.0 5.71e-01 100.0% 82.7%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 60.0 5.55e-01 100.0% 88.0%
3705995 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 61.0 5.44e-01 100.0% 97.5%
3389432 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 61.0 5.57e-01 100.0% 76.0%
4101587 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.70 62.0 5.03e-01 100.0% 63.8%
5046283 2002.1.1.134 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.70 52.0 3.04e-01 80.4% 83.2%
2726885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 4.88e-01 100.0% 68.1%
3517651 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.40e-01 100.0% 72.0%
4024240 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.21e-01 100.0% 67.5%
4966131 4.1.3.1 ↗ beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › Calci_bind_CcbP 0.68 60.0 4.77e-01 100.0% 50.0%
3398464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 5.53e-01 94.6% 94.5%
3749194 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 56.0 5.42e-01 98.2% 84.4%
3924375 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.66 57.0 5.25e-01 100.0% 73.3%
3941170 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.66 57.0 5.35e-01 100.0% 78.6%
3278853 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.24e-01 98.2% 80.0%
4117297 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.27e-01 100.0% 77.1%
3932484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.47e-01 100.0% 87.5%
3964560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 57.0 5.30e-01 100.0% 78.6%
3627859 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.63 54.0 4.96e-01 100.0% 73.3%
3958145 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 57.0 5.40e-01 100.0% 90.8%
3678872 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.63 55.0 5.03e-01 100.0% 86.7%
3354076 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.62 54.0 4.18e-01 100.0% 49.2%
3974170 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 54.0 4.49e-01 100.0% 64.0%
4011774 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.61 53.0 3.60e-01 100.0% 51.4%
3675653 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.61 53.0 4.84e-01 100.0% 82.7%
3410798 6.1.1.1 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.61 51.0 3.90e-01 100.0% 91.0%
3213122 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.59 48.0 3.95e-01 100.0% 48.6%
3500684 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.59 47.0 4.28e-01 100.0% 63.7%
3732571 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.92e-01 98.2% 95.0%
3520308 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.30e-01 100.0% 60.0%
3936053 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.58 46.0 4.36e-01 100.0% 74.3%
5044484 2.1.1.17 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.55 41.0 3.57e-01 83.9% 86.0%
5072111 325.1.6.9 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PF26482 0.54 41.0 3.09e-01 85.7% 73.5%
3627061 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.53 42.0 3.40e-01 89.3% 57.4%
3220497 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.51 41.0 2.81e-01 92.9% 33.2%
3315951 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.51 41.0 3.83e-01 100.0% 93.7%