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MG592495.1__AUR89176.1__NVP1121O_148__00148

Bact-Vir

MG592495.1__AUR89176.1__NVP1121O_148__00148

Identity

Accession:
MG592495 ↗
Kingdom:
phage

Quality

67.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.121.O._10N.286.46.C4

TaxID: 2070726

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-96
PDB
D2 high residues 101-155
PDB
Domain cluster: rep: MG592390.1__AUR81342.1__NVP1003O_67__00067__D77-142
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 45.0 4.35e-01 74.5% 95.2%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.60 49.0 4.42e-01 96.4% 75.9%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 50.0 4.55e-01 100.0% 89.9%
2kkcA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 50.0 4.24e-01 100.0% 89.0%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.59 45.0 3.48e-01 87.3% 68.1%
1x9nA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.59 46.0 4.19e-01 94.5% 72.6%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.86e-01 76.4% 80.9%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 40.0 3.03e-01 76.4% 96.8%
4cclA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.57 44.0 3.29e-01 90.9% 54.2%
3r4cA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.56 43.0 3.73e-01 90.9% 92.1%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 3.98e-01 83.6% 92.4%
1a9xA07 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.56 46.0 4.61e-01 98.2% 92.7%
3laaA00 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.56 37.0 2.72e-01 70.9% 29.0%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.55 43.0 4.30e-01 89.1% 96.6%
1fu0A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.55 45.0 4.05e-01 100.0% 83.9%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.55 43.0 3.19e-01 92.7% 62.2%
1x67A01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.55 43.0 3.34e-01 89.1% 82.0%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.55 43.0 4.15e-01 94.5% 98.5%
4wgkA02 2.60.40.2300 Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain 0.55 45.0 3.43e-01 92.7% 77.4%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 43.0 2.66e-01 89.1% 46.6%
1jelP00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.54 44.0 3.95e-01 100.0% 82.4%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 42.0 2.71e-01 98.2% 63.7%
2hg6A00 3.90.1650.10 Alpha Beta › Alpha-Beta Complex › PA1123-like › PA1123-like 0.53 36.0 3.10e-01 76.4% 78.3%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.52 38.0 3.74e-01 85.5% 87.9%
2dulA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 44.0 2.80e-01 98.2% 28.2%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 41.0 3.13e-01 98.2% 76.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 42.0 3.17e-01 100.0% 66.5%
2dwcB02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.52 42.0 4.18e-01 98.2% 93.2%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.51 38.0 3.13e-01 85.5% 85.2%
2mctA00 2.60.40.4250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.32e-01 90.9% 65.7%
1hc7A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 36.0 2.39e-01 80.0% 94.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3800816 221.14.1.0 ↗ a+b two layers › beta-Grasp › TAR DNA-binding protein 43 N-terminal domain › TAR DNA-binding protein 43 N-terminal domain 0.64 53.0 4.82e-01 98.2% 91.3%
3935401 221.14.1.1 ↗ a+b two layers › beta-Grasp › TAR DNA-binding protein 43 N-terminal domain › TAR DNA-binding protein 43 N-terminal domain › TDP43_N 0.63 53.0 4.74e-01 96.4% 91.3%
4434717 206.1.3.15 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Lant_dehydr_N 0.62 51.0 3.03e-01 98.2% 13.9%
3264411 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 49.0 4.49e-01 98.2% 86.3%
3709350 304.31.1.0 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.59 48.0 3.52e-01 100.0% 92.8%
3706431 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 48.0 3.98e-01 94.5% 91.3%
None — 0.57 38.0 2.69e-01 72.7% 19.5%
3511375 4.1.1.349 ↗ beta barrels › SH3 › SH3 › SH3 › ROF 0.57 42.0 3.81e-01 85.5% 78.8%
3781851 5050.1.1.32 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.56 43.0 2.85e-01 85.5% 69.0%
3676160 108.1.1.47 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › MINDY-3_4_CD 0.56 42.0 2.69e-01 87.3% 21.0%
3946654 517.2.1.0 ↗ beta barrels › CBF-like › TraF › TraF 0.54 45.0 2.97e-01 100.0% 76.7%
4002448 109.4.1.1196 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Glyco_hydro_15 0.54 41.0 2.83e-01 89.1% 60.5%
3932124 5050.1.1.32 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.54 39.0 2.63e-01 81.8% 71.2%
3798345 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 40.0 2.80e-01 89.1% 62.2%
3516325 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.70e-01 87.3% 81.2%
4077806 1056.1.1.1 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.53 43.0 3.03e-01 98.2% 34.1%
4889887 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.53 36.0 2.77e-01 87.3% 28.1%
4056471 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.52 36.0 3.24e-01 72.7% 91.3%
5061359 2003.1.5.19 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.52 41.0 2.57e-01 89.1% 44.7%
4990345 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 36.0 3.78e-01 78.2% 100.0%
3177995 5050.1.1.32 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.51 39.0 2.29e-01 87.3% 36.3%
4318391 2003.1.5.19 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.51 37.0 2.28e-01 81.8% 36.2%
3936863 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 37.0 2.45e-01 81.8% 53.9%
D3 high residues 158-223
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4usoA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 44.0 3.51e-01 83.3% 75.0%
5uc6A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 41.0 3.24e-01 81.8% 73.5%
6cz7A01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.54 39.0 3.98e-01 83.3% 83.9%
3uh0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 36.0 3.04e-01 71.2% 83.9%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 39.0 3.13e-01 80.3% 74.6%
2vpzA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.53 38.0 3.79e-01 83.3% 77.6%
6sxtA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 37.0 2.86e-01 78.8% 68.5%
4f32A01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 38.0 2.67e-01 86.4% 56.4%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3975397 1001.1.1.1 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 0.56 40.0 4.02e-01 81.8% 74.3%
3967333 1001.1.1.1 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 0.55 41.0 3.95e-01 83.3% 73.8%
4563578 1001.1.1.1 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 0.55 41.0 3.89e-01 81.8% 73.8%
4961749 1001.1.1.1 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 0.55 40.0 4.06e-01 83.3% 81.5%
1877998 1001.1.1.2 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.55 41.0 3.61e-01 83.3% 57.1%
1877891 1001.1.1.3 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Nitr_red_alph_N 0.55 41.0 3.60e-01 83.3% 57.1%
3700776 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.51 36.0 3.58e-01 77.3% 78.6%