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MG592495.1__AUR89216.1__NVP1121O_188__00188

Bact-Vir

MG592495.1__AUR89216.1__NVP1121O_188__00188

Identity

Accession:
MG592495 ↗
Kingdom:
phage

Quality

97.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-62
PDB
CATH (64)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.79 46.0 3.34e-01 85.2% 22.9%
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.74 46.0 3.36e-01 85.2% 24.5%
5ygqA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.70 55.0 3.77e-01 86.9% 58.0%
3ab1B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 54.0 3.72e-01 86.9% 60.8%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 54.0 3.29e-01 86.9% 40.3%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.67 53.0 4.30e-01 86.9% 95.0%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.66 54.0 4.67e-01 98.4% 88.9%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.66 52.0 4.07e-01 85.2% 45.7%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 51.0 3.23e-01 83.6% 36.8%
3we0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 52.0 3.40e-01 86.9% 48.5%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.65 46.0 3.32e-01 77.0% 43.8%
4pifA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.65 51.0 3.96e-01 86.9% 97.8%
3agkA01 3.30.960.10 Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 0.64 44.0 3.48e-01 72.1% 91.4%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 50.0 5.03e-01 96.7% 93.3%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.62 51.0 4.78e-01 95.1% 83.1%
4iq0C02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 38.0 2.74e-01 83.6% 21.0%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 52.0 3.61e-01 96.7% 98.5%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 47.0 3.69e-01 100.0% 38.8%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 43.0 4.09e-01 73.8% 91.7%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 51.0 4.08e-01 93.4% 96.7%
2qv8A00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.60 43.0 3.33e-01 77.0% 91.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.59 42.0 4.51e-01 96.7% 95.8%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.64e-01 98.4% 82.4%
6b4oA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 49.0 3.96e-01 93.4% 96.6%
3apaA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.58 49.0 3.85e-01 96.7% 94.2%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 4.08e-01 100.0% 83.5%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.57 47.0 3.64e-01 100.0% 66.5%
7bsbI01 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.57 49.0 3.95e-01 100.0% 98.4%
4tkcA00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.57 44.0 3.67e-01 88.5% 87.3%
3aqgB00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.57 49.0 3.86e-01 100.0% 92.8%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 3.95e-01 100.0% 81.7%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 46.0 3.72e-01 90.2% 56.4%
4o1nD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 49.0 3.97e-01 98.4% 54.8%
4le7A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.55 41.0 3.80e-01 82.0% 82.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.60e-01 93.4% 96.6%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 42.0 3.38e-01 100.0% 41.6%
1aw7A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 48.0 3.84e-01 98.4% 87.8%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.55 45.0 3.90e-01 100.0% 56.9%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 47.0 3.87e-01 96.7% 78.0%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.54 45.0 3.74e-01 93.4% 72.7%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.54 48.0 3.83e-01 100.0% 70.8%
3sokB00 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.53 40.0 3.13e-01 83.6% 43.0%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.53 45.0 3.81e-01 98.4% 80.0%
2cxiA02 3.50.40.10 Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 0.53 41.0 3.03e-01 90.2% 91.4%
3e82E02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 42.0 2.89e-01 85.2% 28.0%
6j0qA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.53 46.0 3.81e-01 98.4% 88.1%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.19e-01 96.7% 89.2%
6cmzA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 3.70e-01 100.0% 97.5%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 3.25e-01 91.8% 40.9%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.35e-01 95.1% 88.4%
5escA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 43.0 3.51e-01 93.4% 55.5%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 3.30e-01 93.4% 73.5%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 3.58e-01 96.7% 73.9%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.52 42.0 3.03e-01 88.5% 39.1%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 43.0 4.25e-01 100.0% 90.9%
2vecA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 44.0 3.54e-01 98.4% 54.0%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 4.09e-01 100.0% 81.2%
4iauA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.51 42.0 3.90e-01 91.8% 98.7%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 2.98e-01 91.8% 69.1%
1arbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 42.0 3.46e-01 96.7% 77.0%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.31e-01 93.4% 50.8%
2zutA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 36.0 3.74e-01 93.4% 79.7%
3f7eA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 41.0 3.28e-01 91.8% 49.2%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 41.0 3.26e-01 93.4% 84.4%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3939128 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 53.0 4.39e-01 82.0% 70.9%
3493556 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 54.0 4.47e-01 83.6% 71.8%
5038405 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 49.0 5.39e-01 96.7% 100.0%
3247727 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 54.0 4.11e-01 83.6% 64.3%
3990001 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.69 51.0 5.46e-01 80.3% 96.2%
3513810 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 52.0 4.09e-01 83.6% 59.3%
1833392 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.68 54.0 3.96e-01 86.9% 94.4%
4030767 3504.1.1.1 beta barrels › MutM N-terminal domain-like › Hypothetical protein YojF › Hypothetical protein YojF › DUF1806 0.67 56.0 4.59e-01 96.7% 91.7%
3219127 2003.1.2.130 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Pyr_redox_2, NAD_binding_8 0.66 52.0 3.11e-01 86.9% 66.0%
4558605 220.5.1.1 beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.66 56.0 4.63e-01 100.0% 88.3%
2156991 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.66 53.0 3.25e-01 86.9% 81.1%
4288670 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.66 52.0 3.25e-01 86.9% 50.3%
5049872 56.2.1.0 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT 0.65 53.0 5.09e-01 90.2% 80.0%
3660003 5.1.10.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › ANAPC4_WD40 0.65 50.0 4.54e-01 82.0% 81.2%
3187470 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.64 50.0 3.33e-01 86.9% 52.0%
5015352 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.95e-01 98.4% 74.7%
None 0.64 47.0 3.16e-01 80.3% 28.3%
3173941 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 48.0 4.19e-01 100.0% 52.0%
4083915 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 55.0 5.16e-01 100.0% 84.0%
4032637 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.63 49.0 5.17e-01 85.2% 94.5%
5053906 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 52.0 5.26e-01 100.0% 98.3%
4505316 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 52.0 5.32e-01 98.4% 100.0%
4100823 4970.1.1.1 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B 0.62 48.0 3.13e-01 82.0% 80.4%
4942685 304.48.1.3 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.62 47.0 2.76e-01 80.3% 43.5%
4629424 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.62 54.0 3.65e-01 100.0% 94.9%
3786328 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.01e-01 100.0% 52.9%
632 4.7.1.2 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.62 51.0 4.62e-01 95.1% 74.4%
3494269 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.61 47.0 2.94e-01 100.0% 15.1%
5039349 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 5.02e-01 90.2% 100.0%
3492162 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.61 46.0 3.56e-01 100.0% 34.7%
3916871 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.60 46.0 3.58e-01 100.0% 35.9%
2646217 5.1.2.34 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › PQQ_2 0.60 43.0 4.32e-01 78.7% 96.9%
3532264 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.59 45.0 3.45e-01 100.0% 33.5%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.59 46.0 4.33e-01 96.7% 70.7%
3779679 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.59 45.0 2.88e-01 100.0% 16.5%
3238632 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.58 47.0 4.28e-01 95.1% 77.8%
3676220 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.58 46.0 3.72e-01 90.2% 93.1%
3734395 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.76e-01 98.4% 95.2%
3556872 76.1.1.2 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin 0.58 50.0 3.86e-01 100.0% 87.6%
2727964 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.58 48.0 4.88e-01 96.7% 98.3%
3510676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 44.0 3.91e-01 96.7% 56.8%
1549085 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.57 44.0 3.63e-01 88.5% 86.6%
4933326 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.57 36.0 3.21e-01 85.2% 44.3%
4161673 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.56 47.0 4.27e-01 96.7% 70.6%
3166373 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.55 32.0 2.93e-01 80.3% 40.0%
3870665 10.32.1.233 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Hemicentin 0.54 48.0 4.08e-01 98.4% 61.0%
3963751 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.54 48.0 3.99e-01 100.0% 61.0%
3702154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 44.0 4.22e-01 96.7% 81.3%
4472483 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 36.0 3.39e-01 72.1% 61.3%
3240098 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.53 43.0 3.80e-01 96.7% 80.8%
4928418 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.53 47.0 4.07e-01 100.0% 76.3%
3587555 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 42.0 4.11e-01 100.0% 84.3%
1565067 9.23.1.2 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_8 0.52 45.0 3.66e-01 100.0% 96.7%
1018849 72.1.1.0 beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like 0.51 42.0 3.88e-01 91.8% 97.5%
3514867 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 42.0 4.01e-01 98.4% 85.3%
1837758 12.1.1.30 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › LBP_C 0.51 36.0 3.79e-01 93.4% 82.5%