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MG592495.1__AUR89228.1__NVP1121O_200__00200

Bact-Vir

MG592495.1__AUR89228.1__NVP1121O_200__00200

Identity

Accession:
MG592495 ↗
Kingdom:
phage

Quality

86.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.121.O._10N.286.46.C4

TaxID: 2070726

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-47
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.74 62.0 4.75e-01 97.7% 85.8%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.72 60.0 4.28e-01 93.2% 73.6%
2auwA01 3.30.2020.10 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain 0.69 59.0 4.88e-01 100.0% 62.2%
2fsjA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 58.0 3.91e-01 100.0% 76.1%
4m8aA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.68 56.0 4.87e-01 90.9% 67.2%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.66 58.0 4.51e-01 100.0% 72.2%
4guzA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.66 47.0 3.13e-01 75.0% 29.8%
3h8lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 46.0 2.99e-01 75.0% 37.6%
2qngA01 2.60.60.30 Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains 0.65 47.0 3.21e-01 79.5% 80.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 59.0 4.63e-01 100.0% 52.9%
4p79A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.64 49.0 3.31e-01 88.6% 63.5%
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 43.0 3.86e-01 70.5% 50.0%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 46.0 2.96e-01 81.8% 23.2%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 53.0 3.14e-01 95.5% 75.5%
7x4pA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.62 42.0 2.99e-01 72.7% 36.9%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 47.0 4.01e-01 95.5% 50.7%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.62 45.0 3.42e-01 81.8% 62.1%
1h6vA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 46.0 2.89e-01 81.8% 22.4%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 52.0 4.03e-01 95.5% 73.2%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 49.0 3.48e-01 100.0% 61.4%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 48.0 4.75e-01 95.5% 85.7%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 51.0 3.84e-01 100.0% 59.3%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.21e-01 100.0% 72.0%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 44.0 3.89e-01 90.9% 72.6%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 46.0 3.99e-01 100.0% 78.8%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 43.0 4.51e-01 100.0% 97.4%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 46.0 3.77e-01 100.0% 60.0%
3cobC00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.56 45.0 2.75e-01 97.7% 79.4%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 42.0 2.59e-01 100.0% 65.2%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.53 45.0 2.61e-01 100.0% 20.5%
3ktzA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.53 38.0 3.22e-01 81.8% 74.7%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.51 38.0 2.25e-01 81.8% 41.2%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 41.0 2.79e-01 88.6% 49.4%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 38.0 3.24e-01 100.0% 46.5%
4hr6B02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.51 35.0 2.89e-01 75.0% 94.2%
1wcdJ01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 2.57e-01 100.0% 77.6%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4340146 327.16.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin 0.78 62.0 3.99e-01 97.7% 19.0%
4961185 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.77 60.0 4.61e-01 100.0% 37.1%
4151254 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.73 51.0 3.35e-01 75.0% 41.7%
4641543 2003.1.2.114 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Thi4, Pyr_redox_2 0.72 51.0 3.33e-01 75.0% 41.1%
3971931 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.72 50.0 3.31e-01 75.0% 40.0%
4128740 2003.1.2.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 0.72 50.0 3.32e-01 75.0% 41.1%
4986651 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.70 53.0 4.55e-01 88.6% 50.7%
3404888 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.70 50.0 4.73e-01 79.5% 90.9%
3164349 2003.1.2.11 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.66 49.0 3.11e-01 81.8% 59.5%
3348812 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 56.0 3.94e-01 100.0% 62.8%
3230113 4.1.1.315 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.65 55.0 3.24e-01 100.0% 29.6%
4952388 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.65 55.0 4.19e-01 100.0% 40.9%
4094589 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.65 48.0 3.12e-01 81.8% 26.2%
5077602 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.64 47.0 2.87e-01 79.5% 20.0%
4983508 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 47.0 3.93e-01 95.5% 48.6%
3381251 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.51e-01 100.0% 77.5%
4263901 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.63 46.0 2.75e-01 81.8% 49.0%
4683204 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.63 47.0 3.55e-01 95.5% 34.3%
4072860 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.63 46.0 2.74e-01 81.8% 49.0%
3582440 4.1.1.107 ↗ beta barrels › SH3 › SH3 › SH3 › XRN1_D1 0.62 51.0 3.46e-01 100.0% 55.7%
3394136 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.61 43.0 4.22e-01 79.5% 100.0%
3230604 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 47.0 2.99e-01 95.5% 67.8%
3505714 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.60 45.0 4.26e-01 86.4% 76.4%
4441750 2.4.1.7 ↗ beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.59 43.0 4.11e-01 100.0% 65.5%
3506771 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.59 54.0 3.13e-01 100.0% 81.8%
3797611 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 50.0 3.09e-01 100.0% 83.4%
3560835 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.59 49.0 2.96e-01 100.0% 16.5%
4679970 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.58 45.0 3.40e-01 97.7% 36.2%
3575329 2484.1.1.15 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.57 49.0 3.24e-01 100.0% 87.7%
4038119 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 50.0 3.44e-01 97.7% 67.3%
2577475 7577.1.1.2 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 0.57 41.0 2.77e-01 79.5% 19.1%
4150297 3735.1.1.9 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat+DUF6531 0.56 48.0 2.75e-01 100.0% 18.6%
4952854 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 42.0 3.71e-01 100.0% 55.4%
3625487 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.55 40.0 3.98e-01 86.4% 80.0%
3932201 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.55 40.0 4.04e-01 86.4% 86.7%
3507995 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.55 44.0 2.86e-01 93.2% 25.1%
4588126 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 3.24e-01 79.5% 67.4%
3413670 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.54 41.0 3.91e-01 86.4% 87.0%
3506222 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.54 41.0 4.09e-01 86.4% 91.1%
3688374 4111.1.1.3 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › DUF1907 0.54 39.0 2.71e-01 79.5% 31.5%
3172800 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 46.0 2.74e-01 100.0% 94.6%
3243143 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 44.0 3.92e-01 100.0% 63.1%
4045485 3943.1.1.1 ↗ beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains 0.54 45.0 3.68e-01 97.7% 58.8%
4014861 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 42.0 2.77e-01 100.0% 18.0%
3571487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 44.0 3.82e-01 100.0% 91.8%
3478869 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 36.0 2.42e-01 81.8% 65.3%
3840059 2003.1.5.26 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.51 41.0 2.56e-01 100.0% 74.3%