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MG592495.1__AUR89254.1__NVP1121O_226__00226

Bact-Vir

MG592495.1__AUR89254.1__NVP1121O_226__00226

Identity

Accession:
MG592495 ↗
Kingdom:
phage

Quality

71.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-59
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.75 48.0 3.15e-01 100.0% 17.0%
5vyqA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.74 52.0 3.54e-01 75.0% 28.2%
4iqfB01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.73 53.0 3.46e-01 76.9% 25.0%
2blnA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.71 53.0 3.50e-01 78.8% 27.0%
4hlbA00 3.30.70.2960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 61.0 5.05e-01 100.0% 60.0%
2g3aA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 60.0 4.82e-01 98.1% 55.2%
3p9xA00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.70 50.0 3.36e-01 76.9% 26.7%
4ua3A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 57.0 4.03e-01 98.1% 33.3%
3da8B00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.69 51.0 3.37e-01 78.8% 24.9%
7b3aA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.69 57.0 4.25e-01 98.1% 60.4%
1lqvB00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.69 56.0 4.01e-01 100.0% 29.5%
3frmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 57.0 3.67e-01 96.2% 19.8%
2kcwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 52.0 3.93e-01 92.3% 34.0%
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.65 39.0 3.50e-01 90.4% 43.7%
2ob0C01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 54.0 3.93e-01 98.1% 39.5%
5jxzA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.64 53.0 3.25e-01 98.1% 51.7%
5uaiA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.64 46.0 3.14e-01 78.8% 25.2%
3n75A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.63 46.0 3.24e-01 78.8% 43.5%
1pqzA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.62 55.0 4.06e-01 100.0% 50.4%
2x5jQ01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 44.0 3.00e-01 76.9% 23.3%
3irpX01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 48.0 3.54e-01 100.0% 31.6%
1b37A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 52.0 3.39e-01 100.0% 23.7%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.58 46.0 4.14e-01 86.5% 73.6%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 49.0 4.04e-01 100.0% 51.0%
7mdhA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.58 48.0 3.38e-01 94.2% 83.2%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.58 48.0 3.59e-01 94.2% 74.5%
7fctA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 45.0 2.94e-01 84.6% 20.0%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 45.0 3.29e-01 100.0% 83.6%
1su1A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.57 36.0 2.56e-01 73.1% 18.5%
2xadA00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.56 50.0 3.19e-01 100.0% 39.8%
1jkxA00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.56 47.0 3.20e-01 100.0% 88.5%
2coaA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.56e-01 94.2% 97.5%
4c5wA02 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.55 48.0 3.01e-01 100.0% 42.2%
1n99A01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 42.0 3.77e-01 90.4% 63.4%
4alzA03 3.30.70.1770 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 4.16e-01 94.2% 85.9%
2jugA01 1.10.10.1830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain 0.54 37.0 3.70e-01 84.6% 72.7%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 41.0 3.66e-01 100.0% 89.4%
3i6dA02 3.90.660.20 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › Protoporphyrinogen oxidase, mitochondrial; domain 2 0.51 42.0 2.91e-01 92.3% 30.7%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 41.0 3.02e-01 100.0% 35.0%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.51 42.0 3.70e-01 100.0% 76.2%
7bkea01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 35.0 3.22e-01 75.0% 59.5%
1g6zA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 41.0 3.81e-01 96.2% 74.3%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3379956 2004.1.1.26 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.84 49.0 3.10e-01 98.1% 13.2%
3283125 213.5.1.1 a+b three layers › Nat/Ivy › AlkZ C-terminal domain › AlkZ C-terminal domain › AlkZ-like 0.82 70.0 5.83e-01 100.0% 55.6%
3289823 213.5.1.1 a+b three layers › Nat/Ivy › AlkZ C-terminal domain › AlkZ C-terminal domain › AlkZ-like 0.79 66.0 5.46e-01 100.0% 52.6%
3785134 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 58.0 3.80e-01 86.5% 21.6%
5073431 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.72 48.0 2.77e-01 71.2% 20.0%
4382597 7571.1.1.1 a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N 0.70 51.0 3.70e-01 76.9% 38.5%
3604712 1189.1.1.1 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › Trypan_glycop 0.70 47.0 2.74e-01 100.0% 9.5%
3921418 233.1.1.0 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.69 54.0 4.65e-01 86.5% 88.2%
3989040 4.16.1.0 beta barrels › SH3 › PhtA domain-like › PhtA domain-like 0.69 41.0 4.08e-01 71.2% 56.4%
5075951 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.69 49.0 4.19e-01 75.0% 75.0%
3587881 102.1.3.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain 0.68 60.0 4.24e-01 100.0% 67.9%
4427829 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.67 51.0 4.05e-01 90.4% 38.4%
2327295 6041.1.1.0 a+b two layers › DUF1107-like › DUF1107-like › DUF1107-like 0.67 58.0 4.67e-01 100.0% 50.5%
4946842 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 56.0 3.90e-01 100.0% 65.8%
5024540 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.66 58.0 4.23e-01 100.0% 60.7%
3946017 213.1.1.31 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.66 51.0 3.83e-01 92.3% 32.7%
3947952 3103.1.1.3 alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_15 0.66 54.0 4.54e-01 100.0% 99.0%
3917386 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.66 57.0 3.98e-01 100.0% 29.1%
4932655 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.65 53.0 5.02e-01 94.2% 81.5%
3744637 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.64 53.0 3.86e-01 100.0% 48.8%
3752375 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.64 52.0 3.60e-01 94.2% 27.2%
4154388 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 49.0 4.21e-01 82.7% 70.0%
3527488 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.64 52.0 3.60e-01 94.2% 27.9%
3968109 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.63 47.0 3.65e-01 90.4% 34.3%
1918436 6051.5.1.1 alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 3 N-terminal docking domain › Class 3 N-terminal docking domain › TubC_N 0.63 46.0 4.52e-01 90.4% 74.6%
5083421 2484.1.1.6 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.63 47.0 3.93e-01 80.8% 63.3%
4520635 371.1.1.1 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_1 0.62 53.0 4.00e-01 92.3% 90.8%
4027686 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.62 42.0 4.18e-01 71.2% 72.7%
4931277 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.62 47.0 3.36e-01 82.7% 54.8%
4221845 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.61 50.0 4.34e-01 100.0% 58.7%
3880817 233.1.1.0 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.61 49.0 4.41e-01 100.0% 62.5%
4263371 3433.1.1.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.61 44.0 4.66e-01 80.8% 97.8%
3778856 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.61 52.0 3.51e-01 98.1% 29.5%
5056939 325.1.4.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Nicotinate/Quinolinate PRTase N-terminal domain-like 0.60 49.0 4.49e-01 92.3% 84.3%
4088180 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.60 50.0 4.40e-01 100.0% 75.3%
3959568 3702.1.1.0 beta complex topology › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain 0.59 47.0 3.03e-01 94.2% 17.8%
3226369 2004.1.2.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP 0.59 52.0 3.26e-01 100.0% 56.4%
3943873 2498.1.1.49 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PhageMetallopep 0.59 49.0 3.47e-01 98.1% 51.7%
4944879 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 51.0 4.37e-01 98.1% 61.2%
3777260 109.4.1.148 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EST1_DNA_bind,EST1 0.59 52.0 2.99e-01 100.0% 18.2%
3385806 3702.1.1.1 beta complex topology › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › PBP_dimer 0.59 48.0 4.34e-01 100.0% 92.5%
1759624 3282.1.1.1 a+b complex topology › LidA › LidA › LidA › LidA_Long_CC 0.58 52.0 2.95e-01 100.0% 11.4%
3997049 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.57 40.0 4.18e-01 76.9% 86.7%
3163830 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.57 50.0 3.88e-01 100.0% 45.0%
4995220 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 48.0 3.88e-01 96.2% 50.0%
3197800 221.13.1.2 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain › RRG1_C 0.55 50.0 3.45e-01 98.1% 78.2%
3739836 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.55 48.0 3.02e-01 96.2% 60.4%
3280548 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.54 43.0 3.84e-01 100.0% 60.0%
137366 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 40.0 2.83e-01 80.8% 27.2%
4338613 4180.1.1.1 a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG 0.54 42.0 3.73e-01 94.2% 74.1%
1833953 3702.1.1.2 beta complex topology › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › PBP_dimer_2 0.54 40.0 3.97e-01 86.5% 98.3%
3611697 1189.1.1.1 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › Trypan_glycop 0.53 48.0 2.86e-01 100.0% 25.9%
3595168 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.53 46.0 3.62e-01 100.0% 46.4%
3627021 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.52 39.0 3.38e-01 88.5% 52.6%
3946654 517.2.1.0 beta barrels › CBF-like › TraF › TraF 0.52 46.0 2.87e-01 100.0% 18.5%
4636507 1189.1.1.0 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor 0.52 44.0 2.70e-01 100.0% 69.9%
4616362 3702.1.1.1 beta complex topology › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › PBP_dimer 0.51 41.0 3.29e-01 96.2% 65.8%
4202053 3603.1.1.1 alpha arrays › Uncharacterized protein AF_2093 N-terminal domain › Uncharacterized protein AF_2093 N-terminal domain › Uncharacterized protein AF_2093 N-terminal domain › DUF6846 0.51 43.0 3.41e-01 98.1% 80.9%
3680084 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.51 41.0 3.72e-01 96.2% 65.3%
5058085 3261.1.1.0 a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb 0.51 40.0 3.75e-01 98.1% 70.8%
4014810 2004.1.1.216 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_4 0.50 43.0 2.79e-01 100.0% 47.5%