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MG592495.1__AUR89263.1__NVP1121O_235__00235

Bact-Vir

MG592495.1__AUR89263.1__NVP1121O_235__00235

Identity

Accession:
MG592495 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.121.O._10N.286.46.C4

TaxID: 2070726

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-72
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xm1A02 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.77 63.0 5.41e-01 88.9% 58.4%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.75 61.0 6.14e-01 90.3% 88.7%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.75 54.0 5.15e-01 76.4% 64.7%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.72 55.0 5.66e-01 83.3% 95.5%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 56.0 5.67e-01 93.1% 98.6%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.67 54.0 5.19e-01 90.3% 75.3%
3rlfF01 1.20.58.370 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › MalF N-terminal region-like 0.66 45.0 4.27e-01 70.8% 59.3%
2wdqD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.65 54.0 4.85e-01 94.4% 73.3%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.64 47.0 5.07e-01 84.7% 100.0%
2ehwA00 6.10.140.1220 Special › Helix non-globular › Helix Hairpins › 0.64 52.0 4.54e-01 93.1% 84.3%
3o39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 48.0 4.41e-01 91.7% 64.6%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.58 39.0 3.96e-01 70.8% 70.4%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.56 43.0 4.17e-01 87.5% 76.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4120498 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.75 67.0 4.77e-01 100.0% 46.5%
5004448 5069.1.2.3 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Respiratory nitrate reductase 1 gamma chain › PF30025 0.75 61.0 4.18e-01 88.9% 28.6%
3993692 604.1.1.179 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF30976 0.74 61.0 5.38e-01 93.1% 61.9%
3700089 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.72 55.0 5.69e-01 87.5% 90.8%
5049361 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.70 51.0 4.96e-01 81.9% 70.0%
2636640 192.15.1.3 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core 0.70 55.0 5.42e-01 86.1% 89.6%
4997481 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.68 50.0 4.60e-01 88.9% 58.0%
3595877 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.68 55.0 4.69e-01 90.3% 54.2%
4832964 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.68 54.0 4.61e-01 88.9% 52.0%
3495293 1203.1.2.0 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 0.68 53.0 4.27e-01 84.7% 43.6%
3414399 5086.1.1.106 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF725 0.68 59.0 4.47e-01 95.8% 41.2%
5030302 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.67 53.0 4.90e-01 87.5% 67.4%
3592632 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.67 53.0 4.87e-01 87.5% 73.7%
3380124 109.4.1.1266 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB 0.66 52.0 3.35e-01 91.7% 17.3%
3614305 206.1.1.71 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.65 50.0 3.13e-01 83.3% 16.2%
2429105 4992.1.1.0 ↗ extended segments › RelB-like › RelB-like › RelB-like 0.64 52.0 5.25e-01 93.1% 94.6%
3628698 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 53.0 4.66e-01 97.2% 62.6%
5022005 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.61 53.0 4.73e-01 100.0% 77.1%