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MG592497.1__AUR89366.1__NVP1122B_06__00006

Bact-Vir

MG592497.1__AUR89366.1__NVP1122B_06__00006

Identity

Accession:
MG592497 ↗
Kingdom:
phage

Quality

72.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.122.B._10N.286.46.F8

TaxID: 1881250

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-114
PDB
Domain cluster: rep: KF147891.1__QKE11213.1__PaBG_00148__00148__D7-109
D2 high residues 133-319
PDB
Domain cluster: rep: IMGVR_UViG_3300020814_000341-3300020814-Ga0214088_182449110__D102-238
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1darA05 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 26.0 3.76e-01 90.4% 79.3%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 26.0 3.93e-01 94.1% 97.3%
2d69B01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.59 34.0 4.07e-01 93.0% 82.5%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 26.0 3.81e-01 90.4% 98.7%
4k2xB02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 26.0 3.67e-01 89.8% 97.6%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 23.0 3.39e-01 91.4% 100.0%
4f67A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 25.0 3.22e-01 92.5% 80.2%
5suhB01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.50 26.0 3.39e-01 94.1% 89.9%
1hxmB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 27.0 3.33e-01 94.7% 85.7%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4960055 1.1.16.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.82 60.0 6.94e-01 85.6% 100.0%
4995675 50.1.1.0 ↗ beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin 0.79 62.0 6.64e-01 88.2% 92.1%
3945977 50.1.1.4 ↗ beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 0.77 66.0 7.01e-01 91.4% 100.0%
3963908 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.71 28.0 4.54e-01 90.9% 97.1%
4032431 50.1.1.3 ↗ beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 0.70 52.0 5.71e-01 88.8% 92.3%
3958771 1.1.16.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.68 36.0 4.43e-01 92.0% 79.2%
3959024 1.1.16.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.68 35.0 4.56e-01 87.2% 86.7%
3289705 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.68 37.0 4.21e-01 91.4% 70.0%
3955063 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.68 37.0 4.24e-01 90.9% 69.7%
3959560 1.1.16.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.67 36.0 4.67e-01 88.2% 89.1%
3286366 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.67 36.0 4.25e-01 90.4% 72.6%
3957925 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.67 37.0 4.29e-01 90.4% 72.1%
3290923 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.67 37.0 4.28e-01 90.9% 73.3%
3953377 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.67 37.0 4.23e-01 92.0% 70.3%
3957231 1.1.16.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.66 35.0 4.58e-01 90.9% 88.2%
3288888 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.66 36.0 4.26e-01 91.4% 74.1%
3959338 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.66 37.0 4.19e-01 90.4% 71.0%
3290618 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.65 36.0 4.15e-01 90.9% 72.1%
3282819 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.65 36.0 4.14e-01 90.4% 72.1%
3574016 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.64 26.0 3.97e-01 90.9% 93.2%
3669715 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.63 36.0 3.75e-01 94.7% 60.6%
3384073 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 37.0 4.52e-01 83.4% 90.8%
4654097 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.57 35.0 3.86e-01 89.8% 74.2%
4134039 304.162.1.1 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.56 25.0 3.64e-01 90.4% 100.0%
3874532 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.53 32.0 4.00e-01 90.9% 97.4%
D3 high residues 347-444
PDB
Domain cluster: rep: IMGVR_UViG_3300028668_000281-3300028668-Ga0257140_10033851__D214-305
D4 high residues 565-641
PDB
D5 medium residues 445-502_554-564
PDB