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MG592505.1__AUR89911.1__NVP1134O_44__00044
Bact-VirMG592505.1__AUR89911.1__NVP1134O_44__00044
Identity
- Accession:
- MG592505 ↗
- Kingdom:
- phage
Quality
75.9
mean pLDDT
Taxonomy
TaxID: 1881203
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-76
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00088__D33-109
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01844.30 best | HNH | 38.2 | 1.80e-09 | 64.3% | 97.9% |
D2
high
residues 78-201
Domain cluster:
rep: MW057859.1__QPB12515.1__X__00050__D5-105
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04383.20 best | KilA-N | 26.1 | 8.70e-06 | 83.1% | 84.1% |
D3
high
residues 207-279
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ucqA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.75 | 55.0 | 5.10e-01 | 79.5% | 75.8% |
| 2fnaA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.68 | 59.0 | 5.85e-01 | 100.0% | 90.8% |
| 2uuiA00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.67 | 50.0 | 3.95e-01 | 79.5% | 62.6% |
| 3zfiA00 | 1.10.890.40 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › | 0.67 | 49.0 | 4.53e-01 | 78.1% | 100.0% |
| 5zi7A03 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.66 | 54.0 | 4.32e-01 | 91.8% | 81.0% |
| 4efcA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.65 | 46.0 | 3.94e-01 | 74.0% | 70.2% |
| 2e87A01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.64 | 47.0 | 3.71e-01 | 79.5% | 67.5% |
| 6umqA01 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.64 | 44.0 | 3.83e-01 | 72.6% | 100.0% |
| 2ffjA01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.63 | 44.0 | 4.86e-01 | 82.2% | 96.4% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.61 | 46.0 | 4.45e-01 | 82.2% | 97.6% |
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.61 | 43.0 | 4.69e-01 | 74.0% | 96.7% |
| 4cxfA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.59 | 43.0 | 4.12e-01 | 78.1% | 66.7% |
| 1on2A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.59 | 41.0 | 4.32e-01 | 72.6% | 88.9% |
| 1c3cA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.59 | 40.0 | 3.95e-01 | 78.1% | 65.4% |
| 6a7hA01 | 1.20.140.180 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.58 | 48.0 | 3.99e-01 | 93.2% | 52.3% |
| 1kf6D00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.57 | 42.0 | 3.64e-01 | 79.5% | 93.3% |
| 1pjqA03 | 1.10.8.210 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Sirohaem synthase, dimerisation domain | 0.57 | 41.0 | 4.27e-01 | 78.1% | 98.5% |
| 2whnA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.57 | 41.0 | 3.61e-01 | 76.7% | 72.7% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.56 | 43.0 | 4.22e-01 | 84.9% | 90.1% |
| 4hw8A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 48.0 | 3.59e-01 | 100.0% | 77.2% |
| 2ougA00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.55 | 46.0 | 3.75e-01 | 94.5% | 79.4% |
| 3f4sA02 | 1.10.40.80 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › | 0.54 | 38.0 | 3.99e-01 | 75.3% | 92.2% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.52 | 42.0 | 3.86e-01 | 89.0% | 96.9% |
| 4r6hA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 43.0 | 3.15e-01 | 100.0% | 78.4% |
| 1vplA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 43.0 | 3.11e-01 | 100.0% | 46.2% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5048048 | 4957.1.1.9 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › HAAS | 0.78 | 56.0 | 5.63e-01 | 75.3% | 98.7% |
| 4964973 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.72 | 44.0 | 5.36e-01 | 86.3% | 100.0% |
| 3586071 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.72 | 63.0 | 5.72e-01 | 100.0% | 80.0% |
| 3928204 | 7062.1.1.0 ↗ | alpha bundles › Helical domain of retinal degeneration 3 protein › Helical domain of retinal degeneration 3 protein › Helical domain of retinal degeneration 3 protein | 0.71 | 60.0 | 5.16e-01 | 95.9% | 96.7% |
| 4961802 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.69 | 54.0 | 5.70e-01 | 95.9% | 95.4% |
| 3760775 | 103.4.1.2 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M | 0.68 | 56.0 | 5.23e-01 | 89.0% | 81.1% |
| 3742359 | 3361.1.1.1 ↗ | alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › RAC_head | 0.68 | 55.0 | 5.10e-01 | 91.8% | 77.9% |
| 3374716 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.68 | 47.0 | 4.58e-01 | 72.6% | 75.0% |
| 4030151 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.67 | 50.0 | 4.10e-01 | 80.8% | 78.5% |
| 3942493 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 50.0 | 5.02e-01 | 100.0% | 82.7% |
| 4015201 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 54.0 | 5.29e-01 | 94.5% | 88.7% |
| 5026925 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.63 | 51.0 | 3.88e-01 | 90.4% | 48.3% |
| 5071361 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.63 | 48.0 | 4.86e-01 | 84.9% | 96.0% |
| 4022288 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 51.0 | 4.88e-01 | 97.3% | 80.0% |
| 3335568 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.62 | 47.0 | 4.24e-01 | 80.8% | 67.0% |
| 4024445 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.61 | 44.0 | 3.57e-01 | 75.3% | 70.0% |
| 3717504 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.61 | 52.0 | 5.07e-01 | 95.9% | 91.3% |
| 3480403 | 3361.1.1.0 ↗ | alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 | 0.61 | 49.0 | 4.49e-01 | 91.8% | 74.0% |
| 4028998 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 53.0 | 4.29e-01 | 100.0% | 66.9% |
| 5068222 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.61 | 47.0 | 3.86e-01 | 83.6% | 66.7% |
| 5018993 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.61 | 45.0 | 3.88e-01 | 82.2% | 66.4% |
| 5046593 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.60 | 52.0 | 3.62e-01 | 98.6% | 73.2% |
| 5081815 | 1075.5.1.8 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3 | 0.59 | 50.0 | 3.89e-01 | 100.0% | 92.2% |
| 3833849 | 2004.1.1.287 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_4 | 0.59 | 45.0 | 2.80e-01 | 82.2% | 95.2% |
| 5035791 | 327.11.2.13 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd | 0.59 | 51.0 | 4.74e-01 | 100.0% | 94.7% |
| 5080134 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.59 | 47.0 | 3.60e-01 | 91.8% | 45.8% |
| 4024219 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.58 | 42.0 | 3.34e-01 | 76.7% | 65.0% |
| 3256138 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.58 | 43.0 | 3.17e-01 | 83.6% | 72.9% |
| 4962834 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.57 | 41.0 | 3.38e-01 | 76.7% | 67.9% |
| 3982634 | 192.29.1.155 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF1722 | 0.57 | 40.0 | 3.90e-01 | 72.6% | 71.2% |
| 3187820 | 148.1.3.234 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7068 | 0.57 | 48.0 | 4.32e-01 | 91.8% | 86.0% |
| 5007694 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.57 | 43.0 | 3.74e-01 | 83.6% | 75.0% |
| 3459212 | 611.9.1.9 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › DUF594 | 0.57 | 39.0 | 3.79e-01 | 72.6% | 62.4% |
| 5001051 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.57 | 39.0 | 4.19e-01 | 78.1% | 88.3% |
| 4970834 | 327.11.2.13 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd | 0.56 | 47.0 | 4.38e-01 | 100.0% | 90.0% |
| 4974945 | 1075.5.1.8 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3 | 0.56 | 48.0 | 3.58e-01 | 97.3% | 92.8% |
| 5002441 | 5076.2.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ | 0.54 | 47.0 | 3.60e-01 | 100.0% | 54.5% |
| 5020141 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.53 | 41.0 | 3.43e-01 | 83.6% | 69.2% |
| 3221091 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 39.0 | 2.94e-01 | 97.3% | 29.8% |
| 4183142 | 11.1.1.154 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgE_dom_N_S | 0.52 | 37.0 | 2.77e-01 | 75.3% | 33.3% |
| 3600104 | 622.1.1.0 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain | 0.51 | 42.0 | 3.60e-01 | 90.4% | 77.1% |
| 5032019 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.51 | 43.0 | 4.09e-01 | 97.3% | 93.3% |