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MG592515.1__AUR90478.1__NVP1144O_30__00030

Bact-Vir

MG592515.1__AUR90478.1__NVP1144O_30__00030

Identity

Accession:
MG592515 ↗
Kingdom:
phage

Quality

74.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.144.O._10N.286.45.B3

TaxID: 1881428

Cluster

View cluster (247 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-68
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3weeB03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.57 42.0 3.43e-01 89.3% 40.0%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 44.0 2.80e-01 91.1% 70.5%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 38.0 2.85e-01 100.0% 29.1%
4gxtA02 1.20.1440.320 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.53 36.0 2.73e-01 98.2% 26.1%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.64 49.0 2.79e-01 82.1% 75.0%
3585011 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 36.0 3.66e-01 82.1% 56.4%
2595209 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.61 37.0 3.67e-01 82.1% 55.2%
1892069 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.61 35.0 3.82e-01 82.1% 70.5%
3277954 2008.1.1.67 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C 0.60 45.0 2.83e-01 82.1% 60.0%
4839809 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 33.0 3.82e-01 80.4% 83.8%
3229557 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.58 49.0 3.01e-01 98.2% 48.8%
3914722 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 38.0 3.51e-01 80.4% 52.0%
3600524 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 43.0 2.52e-01 100.0% 10.2%
3194847 3343.1.1.2 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.55 47.0 2.67e-01 98.2% 35.5%
3878685 2492.1.1.26 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like 0.55 39.0 2.80e-01 87.5% 23.2%
3193113 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.54 48.0 2.79e-01 100.0% 26.3%
3964735 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.52 44.0 2.74e-01 100.0% 42.5%
3731446 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.52 44.0 3.06e-01 94.6% 56.8%
3585180 109.4.1.1316 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf, HAT_PRP39_N, HAT_PRP39_C 0.52 43.0 2.47e-01 96.4% 19.2%
1680686 7519.1.1.1 ↗ a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt 0.51 44.0 3.15e-01 100.0% 80.9%
4976198 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.51 42.0 3.61e-01 98.2% 58.8%
3402777 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.51 43.0 3.01e-01 96.4% 62.6%
D2 medium residues 69-139
PDB
Domain cluster: rep: BK061589.1__DBA08843.1__X__00017__D52-129
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.80 59.0 6.25e-01 100.0% 87.3%
2p4pA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.63 44.0 4.16e-01 73.2% 85.7%
3eehA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 45.0 3.86e-01 80.3% 97.4%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.60 42.0 3.63e-01 76.1% 100.0%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 51.0 4.44e-01 100.0% 79.8%
7zhdA01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.56 45.0 3.72e-01 93.0% 100.0%
3laeA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 46.0 4.46e-01 91.5% 97.5%
1xg9A02 3.10.25.20 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › 0.56 38.0 4.03e-01 100.0% 82.3%
3qdhA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 3.75e-01 98.6% 67.9%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 4.11e-01 98.6% 67.3%
1w96C04 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 43.0 3.03e-01 93.0% 72.7%
1txkB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 46.0 3.98e-01 100.0% 68.7%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 43.0 2.98e-01 95.8% 80.3%
3cueB00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.52 43.0 3.45e-01 100.0% 47.9%
4binA01 2.60.40.3500 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.72e-01 95.8% 92.2%
1rl1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 4.15e-01 98.6% 94.6%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 4.16e-01 100.0% 84.8%
2nqwA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 43.0 4.07e-01 93.0% 96.6%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.91e-01 95.8% 96.8%
1wh0A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 45.0 3.87e-01 100.0% 82.9%
2h6oA02 2.60.40.2810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 42.0 3.36e-01 95.8% 66.5%
1wgvA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 43.0 3.66e-01 98.6% 66.1%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 39.0 2.82e-01 87.3% 69.2%
3glaA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 43.0 3.96e-01 98.6% 94.8%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.88e-01 100.0% 82.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079927 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 59.0 5.46e-01 100.0% 70.0%
5057186 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 56.0 5.13e-01 100.0% 67.8%
4032883 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.69 63.0 5.45e-01 100.0% 69.5%
4260208 1.1.13.62 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.67 59.0 5.20e-01 98.6% 69.5%
4072524 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.65 55.0 4.75e-01 100.0% 60.9%
5054413 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.59 42.0 3.80e-01 77.5% 97.1%
4888726 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.58 50.0 3.89e-01 100.0% 68.3%
3883916 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 48.0 4.13e-01 100.0% 64.3%
3838528 319.3.1.0 ↗ beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ 0.55 45.0 3.97e-01 97.2% 96.5%
4602902 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 46.0 3.83e-01 100.0% 73.1%
3253738 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.03e-01 100.0% 76.4%
4982583 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 47.0 3.61e-01 100.0% 48.8%
3827941 319.1.1.15 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF27746 0.52 45.0 3.76e-01 100.0% 90.0%
5056769 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.52 45.0 4.23e-01 100.0% 86.5%
4928475 319.1.1.5 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.51 44.0 3.78e-01 95.8% 66.7%
3948364 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 45.0 3.69e-01 100.0% 70.4%
3544974 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.81e-01 98.6% 64.5%
4980371 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 45.0 4.20e-01 100.0% 88.6%
4943092 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 44.0 3.65e-01 100.0% 57.8%
4939339 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 44.0 3.56e-01 100.0% 64.1%
4498712 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 43.0 3.70e-01 97.2% 74.8%
5055486 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 44.0 4.19e-01 100.0% 96.5%
5076887 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 44.0 3.69e-01 100.0% 84.8%
5074343 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.50 43.0 4.27e-01 97.2% 100.0%
3598621 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.50 43.0 3.99e-01 100.0% 84.2%
3644584 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.50 44.0 3.55e-01 100.0% 55.7%
4927237 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 44.0 3.50e-01 98.6% 64.3%