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MG592515.1__AUR90487.1__NVP1144O_39__00039

Bact-Vir

MG592515.1__AUR90487.1__NVP1144O_39__00039

Identity

Accession:
MG592515 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.144.O._10N.286.45.B3

TaxID: 1881428

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-179
PDB
Domain cluster: rep: OQ067477.1__WCD44161.1__Lumi_022__00022__D8-128
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.73 35.0 4.30e-01 98.8% 69.4%
2nwaA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.69 28.0 4.21e-01 77.1% 85.3%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.68 36.0 4.14e-01 99.4% 68.9%
1f6fB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 28.0 3.59e-01 92.4% 63.9%
5w4tB03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.63 28.0 3.48e-01 92.9% 64.8%
3oq3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 27.0 3.45e-01 92.9% 67.0%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 26.0 3.29e-01 91.2% 62.7%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 40.0 4.24e-01 100.0% 73.2%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 42.0 4.43e-01 100.0% 76.8%
1dr9A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 29.0 3.69e-01 92.4% 74.3%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 40.0 4.25e-01 100.0% 75.7%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 40.0 4.21e-01 99.4% 74.2%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 40.0 4.23e-01 100.0% 76.5%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 40.0 4.15e-01 100.0% 72.0%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 40.0 4.24e-01 100.0% 76.3%
5cyxA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.58 26.0 3.23e-01 92.9% 64.2%
2z7rA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 23.0 3.28e-01 98.2% 75.0%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 39.0 3.89e-01 100.0% 65.4%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 36.0 4.22e-01 99.4% 89.1%
2r0xA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 40.0 4.16e-01 100.0% 76.9%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 40.0 4.14e-01 99.4% 75.2%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 40.0 4.05e-01 100.0% 72.9%
3s98A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 25.0 3.36e-01 93.5% 80.5%
4gioA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 28.0 3.62e-01 98.8% 83.3%
5z06B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 24.0 3.12e-01 92.4% 70.7%
1ejeA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 39.0 3.80e-01 100.0% 65.1%
2amhA00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.54 32.0 3.12e-01 100.0% 51.8%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 37.0 3.88e-01 99.4% 76.9%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 37.0 3.70e-01 100.0% 68.0%
3cb0D00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 37.0 3.88e-01 100.0% 76.4%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 3.86e-01 100.0% 76.9%
4icwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 32.0 3.63e-01 98.2% 81.5%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 36.0 3.72e-01 100.0% 75.0%
4iykA02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 28.0 3.33e-01 92.4% 77.1%
4npjB01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 28.0 3.11e-01 98.8% 66.4%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.50 32.0 3.26e-01 71.2% 64.0%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964308 1.1.13.37 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2163 0.80 58.0 6.43e-01 100.0% 92.6%
3471961 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.75 30.0 4.15e-01 93.5% 71.1%
2468519 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 45.0 5.78e-01 100.0% 100.0%
4968382 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.75 32.0 4.06e-01 92.9% 65.7%
3059162 1.1.13.30 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.70 49.0 5.64e-01 100.0% 96.0%
3741921 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.70 35.0 4.43e-01 95.3% 78.1%
3881059 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 27.0 4.05e-01 100.0% 82.7%
3402035 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.68 28.0 3.06e-01 93.5% 43.4%
3410348 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 30.0 3.55e-01 92.9% 57.5%
3235846 11.1.1.958 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7652 0.68 26.0 3.20e-01 92.9% 52.2%
3211308 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 27.0 3.57e-01 92.9% 66.3%
4059301 1.1.13.47 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.65 41.0 5.03e-01 98.8% 97.3%
3933946 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 29.0 3.58e-01 92.9% 63.6%
3459363 243.3.1.74 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF1668 0.65 28.0 3.85e-01 100.0% 78.8%
3959431 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 34.0 4.28e-01 95.3% 84.7%
3906210 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 26.0 3.57e-01 92.4% 72.2%
5048313 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 26.0 3.80e-01 93.5% 88.6%
5036101 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 28.0 3.49e-01 92.4% 66.4%
4152523 11.1.1.129 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Interfer-bind 0.62 26.0 3.32e-01 91.8% 64.0%
4954552 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 47.0 4.92e-01 100.0% 84.4%
4097084 11.1.1.803 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_SaeA_3rd 0.61 29.0 3.61e-01 94.1% 72.0%
5033710 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 29.0 3.61e-01 92.4% 71.4%
3238927 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 26.0 3.29e-01 92.9% 65.0%
3255467 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 33.0 3.46e-01 94.7% 56.9%
3996014 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 26.0 3.36e-01 98.8% 70.0%
3841256 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 24.0 2.91e-01 92.4% 53.6%
5035959 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 32.0 3.70e-01 94.7% 72.8%
3786062 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.58 42.0 4.22e-01 100.0% 72.7%
3598687 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 40.0 4.14e-01 99.4% 74.4%
3586087 11.1.4.111 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › fn3 0.58 29.0 3.70e-01 92.9% 81.0%
3805401 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.58 33.0 2.91e-01 78.8% 37.1%
5055743 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.57 40.0 4.39e-01 100.0% 85.7%
3387521 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 25.0 3.23e-01 92.9% 69.5%
3576928 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 26.0 3.25e-01 92.9% 67.6%
4019429 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 24.0 3.19e-01 91.2% 72.9%
3413761 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.56 35.0 3.80e-01 96.5% 73.8%
3611250 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 39.0 4.23e-01 99.4% 86.2%
3995220 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 36.0 3.73e-01 97.6% 71.9%
3767794 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 34.0 3.39e-01 100.0% 61.8%
5017812 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 37.0 3.56e-01 100.0% 66.3%
D2 high residues 367-384_458-524
PDB
Domain cluster: rep: pig_ID_885_F13_scaffold_14_curated_prodigal-single.1__X__X__00028__D17-130
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.80 69.0 5.34e-01 100.0% 44.6%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 40.0 4.63e-01 100.0% 68.3%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.77 70.0 5.38e-01 100.0% 47.1%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.77 64.0 5.07e-01 100.0% 45.8%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.72 67.0 6.47e-01 100.0% 90.5%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.70 54.0 5.08e-01 100.0% 68.3%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.69 55.0 5.40e-01 100.0% 79.6%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.68 61.0 5.08e-01 100.0% 83.9%
3q0bX00 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.67 60.0 5.02e-01 100.0% 62.8%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.67 60.0 4.85e-01 100.0% 77.5%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 61.0 4.99e-01 100.0% 74.1%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 50.0 4.99e-01 94.1% 79.1%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.65 56.0 4.92e-01 100.0% 64.0%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 60.0 4.68e-01 100.0% 69.8%
1twfB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.64 52.0 4.58e-01 87.1% 91.9%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.64 57.0 5.00e-01 97.6% 68.0%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.63 51.0 4.48e-01 87.1% 91.9%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 54.0 4.69e-01 100.0% 85.4%
1ja1A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 48.0 4.26e-01 100.0% 58.2%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.61 55.0 5.04e-01 100.0% 76.1%
2wzpR01 2.30.300.20 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Phage tail base-plate attachment protein, domain D1/D2 0.61 56.0 4.23e-01 100.0% 54.6%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 54.0 5.06e-01 100.0% 81.0%
1k8wA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.60 48.0 3.56e-01 89.4% 52.7%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 36.0 3.77e-01 78.8% 65.8%
2rc5B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 51.0 4.42e-01 100.0% 69.3%
1r3eA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.58 46.0 3.53e-01 89.4% 57.5%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.58 52.0 4.43e-01 100.0% 86.0%
2q7aA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 50.0 4.12e-01 96.5% 64.5%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 4.10e-01 90.6% 65.7%
1dj0A01 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.57 42.0 3.63e-01 80.0% 71.0%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 40.0 4.00e-01 89.4% 74.4%
3i4hX02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 42.0 3.99e-01 82.4% 71.2%
3mdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 43.0 3.95e-01 96.5% 64.5%
1j6wA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.55 47.0 3.79e-01 94.1% 49.1%
5qinA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 43.0 4.33e-01 96.5% 84.7%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.72e-01 81.2% 66.3%
3x0xA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.55 46.0 4.37e-01 100.0% 92.6%
4qdjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 43.0 3.22e-01 95.3% 34.6%
3mwbB03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 39.0 3.81e-01 91.8% 68.4%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.55e-01 74.1% 65.1%
1mruA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 44.0 4.34e-01 96.5% 83.7%
3ewkA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 41.0 3.83e-01 83.5% 99.1%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.73e-01 92.9% 59.8%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 43.0 2.95e-01 96.5% 24.5%
5w7tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 42.0 4.09e-01 95.3% 77.3%
2qswA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 34.0 3.42e-01 83.5% 64.4%
3jafA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.51 45.0 3.43e-01 100.0% 81.5%
2qrrA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 35.0 3.37e-01 88.2% 61.9%
2w2sA00 3.10.460.20 Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 0.51 37.0 3.05e-01 78.8% 42.3%
4nehA04 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.50 42.0 3.47e-01 91.8% 66.2%
ECOD (98)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973341 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.85 67.0 6.70e-01 100.0% 82.4%
3511358 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.83 77.0 7.26e-01 100.0% 94.0%
5002753 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.81 70.0 7.01e-01 100.0% 91.8%
4608778 1.1.7.107 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.76 61.0 5.38e-01 100.0% 60.8%
4033372 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 68.0 6.17e-01 100.0% 75.5%
3968097 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.73 60.0 5.49e-01 98.8% 67.3%
4936008 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.73 56.0 5.40e-01 100.0% 72.6%
4094235 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.73 65.0 5.66e-01 100.0% 65.6%
4954552 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.72 65.0 5.29e-01 100.0% 78.1%
4988103 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 66.0 6.36e-01 100.0% 91.6%
3256920 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 66.0 5.77e-01 100.0% 76.0%
3741028 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.72 61.0 5.62e-01 100.0% 73.3%
3981111 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.72 62.0 5.03e-01 100.0% 51.6%
3981654 1.1.13.40 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.71 65.0 5.95e-01 100.0% 95.5%
3970830 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 62.0 5.90e-01 100.0% 81.0%
3741921 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.71 60.0 5.61e-01 100.0% 73.3%
3969448 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 65.0 6.02e-01 100.0% 99.0%
1914511 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.71 62.0 5.40e-01 97.6% 63.8%
3966429 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.71 63.0 6.17e-01 95.3% 98.9%
3972305 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 63.0 6.16e-01 95.3% 98.9%
3987460 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.70 60.0 5.49e-01 100.0% 71.8%
3941539 1.1.13.40 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.70 63.0 5.87e-01 98.8% 97.1%
3943691 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.70 61.0 5.89e-01 94.1% 96.8%
4031285 1.1.13.64 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal 0.70 63.0 6.16e-01 100.0% 92.2%
5002750 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 62.0 5.80e-01 98.8% 92.4%
3970827 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 63.0 6.32e-01 98.8% 97.6%
3973282 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.69 59.0 5.45e-01 100.0% 72.7%
3059162 1.1.13.30 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.69 62.0 5.45e-01 100.0% 90.3%
184486 1.1.13.26 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.69 55.0 5.65e-01 100.0% 90.1%
3973898 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.69 62.0 5.19e-01 100.0% 58.6%
3603127 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 62.0 6.10e-01 100.0% 94.4%
4036849 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.68 62.0 5.31e-01 100.0% 63.9%
3299946 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.68 58.0 5.24e-01 100.0% 68.7%
4247994 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.68 62.0 5.88e-01 100.0% 97.0%
4809346 1.1.13.57 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.67 57.0 5.69e-01 92.9% 97.7%
3900933 11.1.1.54 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.67 51.0 4.35e-01 95.3% 50.0%
3586385 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 42.0 5.02e-01 90.6% 98.2%
4638008 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.66 50.0 4.40e-01 78.8% 95.8%
1320672 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.65 56.0 3.93e-01 100.0% 30.4%
4276781 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.64 58.0 4.22e-01 100.0% 37.7%
None — 0.64 58.0 3.52e-01 100.0% 16.9%
3652827 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.64 47.0 4.07e-01 78.8% 51.9%
3321868 1.1.9.4 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA 0.64 57.0 4.13e-01 100.0% 44.7%
4538400 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 57.0 4.89e-01 97.6% 67.7%
4648999 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.63 58.0 4.17e-01 100.0% 37.7%
4665306 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.63 57.0 3.98e-01 100.0% 32.5%
4566229 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.63 57.0 3.46e-01 100.0% 16.8%
4509138 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.63 57.0 4.12e-01 100.0% 37.7%
4131458 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.63 57.0 4.04e-01 100.0% 35.3%
2755063 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.63 57.0 4.16e-01 100.0% 39.2%
4481366 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.62 56.0 4.02e-01 100.0% 35.3%
4531216 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.62 56.0 3.99e-01 100.0% 34.6%
3728982 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.62 47.0 4.04e-01 80.0% 94.6%
4098347 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 56.0 3.46e-01 100.0% 17.3%
4190222 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.61 55.0 3.97e-01 100.0% 35.3%
4054945 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.60 48.0 3.55e-01 89.4% 51.8%
188 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.60 54.0 4.92e-01 100.0% 75.5%
3240679 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 52.0 4.25e-01 100.0% 51.2%
4197562 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.60 47.0 3.51e-01 89.4% 51.8%
4254454 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.60 48.0 3.49e-01 89.4% 50.2%
4462724 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.59 47.0 3.55e-01 89.4% 54.9%
4103518 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.59 47.0 3.60e-01 89.4% 59.1%
3734783 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.59 49.0 3.14e-01 88.2% 52.6%
4030345 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.58 44.0 3.21e-01 81.2% 36.4%
3518863 221.1.2.16 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › MTRES1_C 0.58 43.0 4.02e-01 77.6% 97.1%
3177162 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 50.0 4.55e-01 92.9% 73.6%
4933784 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.57 43.0 3.28e-01 83.5% 63.7%
4330191 304.102.1.0 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.57 44.0 3.34e-01 84.7% 38.1%
5063453 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.56 43.0 3.17e-01 83.5% 56.3%
3801149 11.1.5.123 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF3694 0.56 49.0 3.65e-01 98.8% 56.5%
5024648 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.56 42.0 3.19e-01 83.5% 60.4%
4126423 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.56 43.0 3.24e-01 83.5% 53.0%
3835816 11.1.1.122 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.56 45.0 4.19e-01 97.6% 70.0%
4931484 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.55 44.0 3.31e-01 88.2% 60.0%
4945745 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.55 44.0 3.22e-01 88.2% 54.6%
3220081 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.55 43.0 3.15e-01 87.1% 53.7%
4935771 304.8.1.121 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Pus10_C 0.55 43.0 3.20e-01 88.2% 54.7%
5058386 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.55 43.0 3.42e-01 88.2% 48.9%
4943359 304.102.1.13 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.55 43.0 3.23e-01 88.2% 39.1%
4649925 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.54 41.0 3.13e-01 81.2% 37.6%
5033279 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.54 43.0 3.19e-01 88.2% 38.3%
5036917 304.102.1.13 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.54 42.0 3.61e-01 88.2% 61.3%
4069712 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.54 41.0 3.20e-01 83.5% 56.0%
4327557 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.54 42.0 3.10e-01 88.2% 54.3%
3501988 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.54 43.0 3.09e-01 88.2% 52.7%
3350908 304.102.1.3 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.53 41.0 2.98e-01 85.9% 74.4%
4103990 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.53 42.0 3.19e-01 88.2% 57.8%
5001314 304.102.1.4 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.53 42.0 3.09e-01 87.1% 37.1%
4275176 304.102.1.5 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.53 42.0 3.18e-01 89.4% 40.4%
4223490 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.53 42.0 3.21e-01 88.2% 61.4%
4595775 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.53 42.0 3.16e-01 89.4% 58.3%
4557453 304.102.1.9 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N, DKCLD, TruB_C_2, Pus10_C 0.53 41.0 3.08e-01 87.1% 37.1%
4137463 325.1.7.8 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RnfC_N 0.53 41.0 4.26e-01 85.9% 90.0%
3893621 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.53 42.0 3.83e-01 90.6% 67.5%
3592093 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.52 41.0 3.00e-01 88.2% 54.6%
4077036 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.52 41.0 3.15e-01 89.4% 40.9%
4591715 304.102.1.5 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.51 42.0 3.17e-01 94.1% 40.0%
5019301 304.102.1.13 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.51 42.0 3.09e-01 94.1% 38.0%
D3 medium residues 186-278
PDB
Domain cluster: rep: IMGVR_UViG_3300017642_000002-3300017642-Ga0183098_1071013__D184-256
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.75 52.0 5.29e-01 89.2% 72.0%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.73 52.0 5.31e-01 91.4% 76.7%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.72 51.0 5.74e-01 91.4% 97.2%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.68 52.0 5.64e-01 89.2% 98.7%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.68 57.0 5.69e-01 89.2% 93.6%
1i8dC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.67 51.0 5.30e-01 90.3% 86.4%
5yhhA00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.66 54.0 4.19e-01 88.2% 75.9%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.65 53.0 5.31e-01 88.2% 94.8%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.64 50.0 5.19e-01 83.9% 100.0%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.64 47.0 5.14e-01 77.4% 100.0%
4g6iC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 53.0 5.32e-01 90.3% 89.4%
1o67C00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.63 55.0 4.17e-01 94.6% 71.4%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.63 52.0 5.34e-01 88.2% 97.8%
3a35A01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 54.0 5.44e-01 93.5% 93.5%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.63 49.0 5.02e-01 83.9% 100.0%
1i8dA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 53.0 5.47e-01 93.5% 98.9%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 47.0 4.73e-01 80.6% 83.7%
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.61 31.0 4.07e-01 77.4% 93.8%
1f60A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 45.0 4.31e-01 78.5% 88.0%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.60 31.0 3.98e-01 77.4% 90.2%
4beuA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.59 54.0 4.35e-01 100.0% 65.1%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 49.0 4.85e-01 90.3% 99.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.72e-01 92.5% 100.0%
2dy3D01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.58 51.0 4.68e-01 96.8% 74.0%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 41.0 4.29e-01 79.6% 80.5%
3hurA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.56 49.0 4.10e-01 97.8% 57.8%
3k25A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 39.0 2.84e-01 77.4% 85.4%
7zvmA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 31.0 3.01e-01 93.5% 51.0%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 30.0 3.52e-01 89.2% 86.2%
3n6rA04 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 31.0 3.51e-01 89.2% 82.6%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5056460 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.84 61.0 6.84e-01 91.4% 93.3%
5078307 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.81 63.0 7.05e-01 89.2% 100.0%
1685099 1.1.7.51 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NeqB_N 0.74 45.0 5.46e-01 82.8% 96.6%
1954233 11.21.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.74 66.0 6.80e-01 93.5% 100.0%
5064404 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 44.0 5.31e-01 77.4% 95.0%
4867073 2485.3.1.8 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › P22_CoatProtein 0.71 61.0 5.65e-01 89.2% 99.1%
3386631 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.69 54.0 5.72e-01 93.5% 96.2%
4883589 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 49.0 4.88e-01 89.2% 72.9%
4157526 1.1.12.1 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.67 50.0 4.62e-01 84.9% 62.6%
4602848 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.64 53.0 5.39e-01 93.5% 92.2%
3251646 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.63 43.0 4.59e-01 87.1% 82.5%
5070852 1.1.8.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › ARPP-1 0.63 47.0 4.59e-01 91.4% 71.4%
4623074 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.63 54.0 5.10e-01 93.5% 91.8%
3263990 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 44.0 4.66e-01 89.2% 86.3%
4932663 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.62 46.0 4.38e-01 78.5% 86.4%
3696719 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 55.0 5.05e-01 96.8% 98.3%
3388311 1.1.7.100 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PGBA_N 0.61 51.0 5.28e-01 89.2% 100.0%
3264861 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.61 42.0 4.37e-01 88.2% 78.8%
1140150 1.1.7.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ala_racemase_C 0.60 54.0 4.55e-01 100.0% 75.5%
3267060 11.1.1.820 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd 0.60 42.0 4.48e-01 87.1% 86.3%
3598857 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.59 44.0 4.06e-01 78.5% 79.2%
3608683 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.59 45.0 4.04e-01 81.7% 75.4%
3251889 11.1.1.820 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd 0.57 41.0 4.29e-01 89.2% 83.5%
2988075 259.1.1.1 ↗ a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › GP120 0.57 47.0 3.69e-01 92.5% 98.1%
3250137 11.1.1.820 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd 0.57 41.0 4.26e-01 87.1% 82.4%
3275452 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 3.90e-01 89.2% 63.6%
3625407 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.57 41.0 4.24e-01 88.2% 83.5%
3274455 11.1.1.820 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd 0.56 41.0 3.92e-01 89.2% 65.5%
3648215 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.56 42.0 4.11e-01 88.2% 74.0%
3248013 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.56 40.0 4.20e-01 88.2% 83.5%
3522892 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.56 40.0 4.10e-01 88.2% 78.9%
3227981 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.56 40.0 4.13e-01 88.2% 80.0%
3224115 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.55 40.0 4.08e-01 83.9% 78.9%
3274941 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 4.32e-01 89.2% 88.2%
3710460 1.1.7.45 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.55 47.0 4.50e-01 94.6% 100.0%
3830010 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.55 42.0 4.12e-01 88.2% 77.0%
3905931 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.55 40.0 4.14e-01 87.1% 82.2%
3710311 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 48.0 4.31e-01 98.9% 100.0%
3273437 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 4.05e-01 87.1% 76.0%
3330358 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.54 41.0 3.80e-01 87.1% 63.3%
3246056 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 4.26e-01 95.7% 82.0%
3885325 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.54 42.0 4.22e-01 84.9% 84.2%
3253793 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 3.97e-01 88.2% 73.3%
3257691 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.53 41.0 4.19e-01 89.2% 87.8%
5063662 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 3.83e-01 91.4% 83.7%
3457999 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 4.12e-01 98.9% 76.5%
3765958 189.1.1.0 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP 0.52 41.0 2.60e-01 87.1% 15.9%
3392419 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.52 42.0 4.03e-01 87.1% 81.9%
3513302 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.52 41.0 3.97e-01 86.0% 89.5%
3573381 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.98e-01 87.1% 85.7%
3250988 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 4.15e-01 90.3% 85.0%
3262826 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.51 41.0 4.11e-01 89.2% 86.3%
3267248 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 38.0 3.86e-01 91.4% 82.1%
D4 medium residues 279-354
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2uy1A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 38.0 2.35e-01 90.8% 11.0%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 40.0 3.98e-01 73.7% 95.1%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964700 3070.1.1.0 ↗ a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.83 74.0 7.29e-01 94.7% 92.5%
3742618 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.56 42.0 3.77e-01 81.6% 75.0%
1685105 160.1.1.4 ↗ alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C 0.53 36.0 3.57e-01 71.1% 98.8%
3623134 102.1.3.7 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › Nrap_D5 0.53 45.0 3.62e-01 96.1% 78.1%
1117796 102.1.3.7 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › Nrap_D5 0.50 42.0 3.40e-01 96.1% 80.0%
D5 medium residues 385-455
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wruA03 3.30.1920.10 Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › Baseplate protein-like domains - 2 layer sandwich fold 0.79 54.0 5.90e-01 100.0% 89.3%
2nwhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 47.0 3.13e-01 93.0% 90.9%
1dinA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 40.0 2.77e-01 85.9% 23.2%
3vqiA01 3.10.20.620 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 38.0 3.42e-01 80.3% 50.9%
4ifeA02 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.52 45.0 3.18e-01 97.2% 88.1%
1yx1A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.52 44.0 3.06e-01 95.8% 99.2%
4idiB00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.51 33.0 2.93e-01 73.2% 41.4%
2abqA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 42.0 2.88e-01 100.0% 80.3%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4049733 3071.1.1.8 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › YQBQ 0.85 67.0 6.97e-01 100.0% 90.8%
119096 3071.1.1.0 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.79 54.0 5.90e-01 100.0% 89.3%
5002661 3071.1.1.0 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.76 60.0 6.29e-01 100.0% 93.8%
3980575 3071.1.1.0 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.70 58.0 5.84e-01 100.0% 91.4%
5002752 3071.1.1.0 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.67 59.0 5.83e-01 98.6% 98.7%
4889790 3071.1.1.7 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 0.66 59.0 4.48e-01 100.0% 42.8%
2468520 3071.1.1.0 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.63 56.0 5.53e-01 100.0% 92.2%
3507630 221.1.1.168 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd, PI3K_p85B 0.59 44.0 2.92e-01 81.7% 21.0%
162835 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.57 47.0 3.13e-01 93.0% 90.9%
3180319 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.57 48.0 3.50e-01 95.8% 46.5%
5056047 212.1.1.61 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Nre_C 0.57 47.0 3.57e-01 100.0% 55.0%
3958356 323.1.1.9 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_cat,WS_DGAT_C 0.56 40.0 2.84e-01 77.5% 91.4%
3259404 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.56 45.0 2.95e-01 93.0% 92.1%
5080533 2003.1.5.62 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.55 44.0 2.83e-01 91.5% 18.0%
3953419 323.1.1.9 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_cat,WS_DGAT_C 0.54 39.0 2.74e-01 78.9% 84.6%
3594362 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.54 44.0 2.91e-01 93.0% 91.4%
3528939 221.1.1.55 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RAWUL 0.53 34.0 2.93e-01 78.9% 39.2%
4022242 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 42.0 3.22e-01 90.1% 76.7%
3618598 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 35.0 3.00e-01 88.7% 40.8%
3729823 2003.6.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like 0.51 42.0 2.70e-01 91.5% 74.2%
1159164 221.1.1.35 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Urm1 0.51 34.0 2.94e-01 73.2% 41.2%
3593889 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 34.0 2.95e-01 77.5% 40.8%
5046946 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.50 40.0 2.82e-01 94.4% 99.6%
D6 medium residues 531-611_638-669_797-834
PDB
Domain cluster: rep: JSantini_GMIN_scaffold_8_prodigal-single.1__X__X__00224__D16-124_253-277
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oj5C04 2.160.20.130 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.73 50.0 4.67e-01 81.5% 56.8%
2b0rB00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.73 43.0 4.24e-01 82.8% 55.1%
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.73 43.0 4.24e-01 82.8% 55.4%
1qjvA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.61 53.0 4.08e-01 95.4% 59.6%
4w8qA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.57 53.0 4.55e-01 100.0% 72.2%
1igrA01 3.80.20.20 Alpha Beta › Alpha-Beta Horseshoe › 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A › Receptor L-domain 0.54 47.0 4.41e-01 96.7% 78.3%
2yuhA01 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.53 45.0 4.28e-01 90.7% 77.9%
1peqA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.53 48.0 3.37e-01 100.0% 72.8%
4akgA12 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 33.0 3.72e-01 84.8% 82.9%
2ddxA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 45.0 3.55e-01 100.0% 76.2%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2516583 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.80 39.0 5.04e-01 80.8% 80.0%
4932011 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.74 39.0 4.46e-01 81.5% 67.0%
4554798 207.2.1.9 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase 0.73 49.0 4.35e-01 82.1% 48.6%
3187916 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.73 46.0 4.04e-01 84.8% 43.6%
5027446 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.69 48.0 4.04e-01 81.5% 43.3%
5082766 207.2.1.20 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.64 52.0 3.94e-01 84.1% 50.7%
4935712 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.64 41.0 4.19e-01 84.1% 66.9%
4953411 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.64 51.0 3.57e-01 84.1% 37.9%
4951076 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.64 40.0 4.27e-01 84.1% 71.1%
5034990 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.63 52.0 3.76e-01 86.1% 36.3%
3261847 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.63 57.0 4.47e-01 97.4% 92.4%
3106951 207.2.1.4 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase 0.62 55.0 4.21e-01 96.0% 52.1%
4654098 207.7.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C › GXGXG 0.61 50.0 4.10e-01 86.8% 78.5%
5034581 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.61 48.0 3.53e-01 82.8% 32.8%
4802763 207.1.1.5 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › Recep_L_domain 0.61 43.0 4.39e-01 82.1% 72.4%
5049574 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.60 47.0 4.03e-01 84.1% 53.0%
3680324 207.1.1.95 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.56 47.0 3.84e-01 88.1% 54.4%
3796932 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.56 46.0 3.33e-01 86.1% 41.7%
4388782 207.1.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 0.53 43.0 3.50e-01 86.8% 60.7%
D7 medium residues 612-637_670-719_782-796
PDB