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MG592516.1__AUR90574.1__NVP1147O_51__00051

Bact-Vir

MG592516.1__AUR90574.1__NVP1147O_51__00051

Identity

Accession:
MG592516 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.147.O._10N.286.49.E9

TaxID: 1881206

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 109-174
PDB
Domain cluster: rep: gwa1_scaffold_0_prodigal-single.1__X__X__00047__D32-85
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF13395.13 best HNH_4 26.9 5.30e-06 87.9% 74.1%
PF14279.13 HNH_5 59.0 4.90e-16 75.8% 87.5%
PF01844.30 HNH 48.2 1.30e-12 69.7% 97.9%
D2 medium residues 1-55
PDB
Domain cluster: rep: IMGVR_UViG_3300005835_000100-3300005835-Ga0078910_10067915__D4-44
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.87 62.0 6.34e-01 74.5% 81.5%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.82 52.0 4.60e-01 81.8% 46.2%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 55.0 4.56e-01 81.8% 46.8%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.71 60.0 4.54e-01 92.7% 40.7%
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.68 52.0 3.76e-01 83.6% 31.2%
2luyA01 3.30.60.210 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Stc1 domain 0.67 47.0 4.67e-01 74.5% 87.7%
3o70A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 43.0 4.36e-01 72.7% 67.3%
2m85A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 47.0 4.49e-01 76.4% 64.6%
3goxA03 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.64 53.0 4.66e-01 90.9% 66.7%
4uf0A03 2.10.110.20 Mainly Beta › Ribbon › Cysteine Rich Protein › 0.64 44.0 4.23e-01 72.7% 64.6%
5fb0C01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 44.0 4.31e-01 81.8% 68.9%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.62 43.0 3.13e-01 92.7% 25.3%
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.61 43.0 4.78e-01 78.2% 97.7%
2w0tA00 3.30.60.160 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.58 37.0 4.07e-01 92.7% 83.7%
4bbqA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 39.0 3.69e-01 72.7% 61.4%
2xjyA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.53 42.0 4.13e-01 94.5% 100.0%
2d8yA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.52 44.0 4.09e-01 100.0% 91.7%
1weeA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 36.0 3.39e-01 85.5% 56.9%
4jcjB01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.51 41.0 3.96e-01 96.4% 100.0%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979944 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.96 66.0 7.65e-01 70.9% 97.5%
1002459 378.1.1.13 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › His_Me_b4a2 0.89 62.0 6.40e-01 72.7% 82.7%
3561303 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.84 59.0 4.14e-01 81.8% 24.8%
3881136 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.83 54.0 5.69e-01 78.2% 74.0%
3397474 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.83 56.0 6.52e-01 74.5% 97.5%
3250498 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.79 56.0 4.55e-01 81.8% 41.0%
3431026 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.79 56.0 4.61e-01 81.8% 43.2%
4013051 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.79 62.0 5.25e-01 83.6% 55.3%
3796017 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 52.0 4.63e-01 80.0% 50.7%
4957868 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.78 45.0 5.46e-01 70.9% 91.4%
3995951 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 56.0 4.80e-01 81.8% 49.4%
3573660 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.78 56.0 4.82e-01 81.8% 49.4%
4929415 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.77 52.0 5.11e-01 81.8% 65.0%
3623406 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.77 57.0 4.69e-01 83.6% 45.3%
5042937 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.76 53.0 5.36e-01 81.8% 72.7%
3472338 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.76 55.0 5.40e-01 81.8% 70.0%
3255227 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.76 57.0 4.71e-01 87.3% 46.3%
3788517 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.76 57.0 4.27e-01 87.3% 33.8%
3636674 376.1.1.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.75 49.0 5.20e-01 70.9% 75.5%
3692487 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.75 57.0 4.58e-01 87.3% 44.0%
3259718 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.75 54.0 4.29e-01 81.8% 40.0%
3636201 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.74 56.0 4.34e-01 87.3% 38.3%
3259913 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.74 55.0 4.91e-01 83.6% 57.3%
3482300 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.74 57.0 4.87e-01 87.3% 52.9%
3643916 375.1.1.235 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ADD_ATRX 0.74 50.0 5.75e-01 80.0% 97.5%
3301384 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.74 50.0 5.09e-01 70.9% 72.7%
5031996 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.73 50.0 5.04e-01 70.9% 72.7%
3211002 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 51.0 4.73e-01 74.5% 84.3%
3636589 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 54.0 4.56e-01 87.3% 48.9%
4990133 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.71 49.0 4.91e-01 70.9% 70.9%
3468455 376.1.3.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › ADD_ATRX 0.71 48.0 5.49e-01 80.0% 97.5%
3702126 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.71 54.0 4.63e-01 81.8% 51.8%
3559289 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 56.0 4.78e-01 87.3% 55.3%
3869401 376.1.3.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.70 61.0 4.55e-01 98.2% 38.6%
3231284 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 49.0 4.67e-01 74.5% 93.8%
4024032 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 54.0 4.64e-01 87.3% 54.1%
3466575 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 53.0 5.01e-01 81.8% 73.8%
3225705 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 48.0 5.26e-01 80.0% 88.9%
3484196 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 49.0 4.46e-01 74.5% 61.4%
3717337 376.1.1.165 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › FYVE 0.69 44.0 3.99e-01 74.5% 48.0%
4466003 376.1.3.44 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Siva 0.68 45.0 4.32e-01 70.9% 58.5%
3301048 376.1.1.19 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv 0.68 47.0 5.30e-01 80.0% 100.0%
3912396 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.68 49.0 4.96e-01 76.4% 76.4%
3855126 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.67 42.0 4.86e-01 85.5% 100.0%
4056277 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.67 45.0 4.23e-01 72.7% 58.5%
3372361 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.66 45.0 5.02e-01 70.9% 97.5%
3253247 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 49.0 4.64e-01 81.8% 66.2%
3846283 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.66 46.0 4.82e-01 80.0% 82.0%
3685606 376.1.3.31 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 0.63 50.0 4.69e-01 85.5% 92.3%
5059659 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.62 42.0 4.80e-01 70.9% 100.0%
5049855 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 43.0 4.25e-01 81.8% 68.3%
3482872 376.1.3.56 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PF30811 0.61 48.0 4.29e-01 92.7% 60.0%
3510157 376.1.5.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger 0.61 43.0 4.65e-01 87.3% 93.3%
2428742 3961.1.1.0 ↗ 0.58 49.0 3.78e-01 94.5% 87.4%
4199319 377.4.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › RRG8 0.58 45.0 4.28e-01 85.5% 98.5%
3688523 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 47.0 3.99e-01 94.5% 54.7%
3300469 377.9.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.57 39.0 4.10e-01 87.3% 82.0%
4966035 376.1.3.98 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DUF7562 0.56 50.0 4.88e-01 100.0% 100.0%
3411509 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.54 41.0 4.38e-01 92.7% 100.0%
2878975 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.53 38.0 3.53e-01 85.5% 56.6%
4942573 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 32.0 3.13e-01 89.1% 55.0%
3594353 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.52 41.0 3.96e-01 87.3% 100.0%
D3 medium residues 56-108
PDB
Domain cluster: representative