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MG592533.1__AUR91888.1__NVP1166O_27__00027

Bact-Vir

MG592533.1__AUR91888.1__NVP1166O_27__00027

Identity

Accession:
MG592533 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.166.O._10N.261.51.C7

TaxID: 1881341

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-57
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4awyB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.74 54.0 3.34e-01 76.5% 93.3%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.63 46.0 3.14e-01 94.1% 21.9%
3u37A02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.61 52.0 3.28e-01 100.0% 19.0%
7o0aD01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.60 51.0 3.28e-01 92.2% 68.5%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.59 50.0 3.93e-01 92.2% 92.2%
3sxpA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 43.0 2.85e-01 78.4% 20.2%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4954542 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.87 56.0 6.48e-01 70.6% 97.1%
3344431 377.9.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.71 50.0 5.27e-01 74.5% 88.9%
3291252 4107.1.1.1 ↗ alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR 0.67 48.0 3.25e-01 94.1% 21.7%
4314985 377.1.1.15 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YacG 0.67 51.0 5.39e-01 86.3% 97.7%
3962449 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 42.0 4.10e-01 82.4% 60.0%
3562264 219.1.1.112 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.66 62.0 3.59e-01 100.0% 86.0%
3405764 377.9.1.9 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 0.65 43.0 4.75e-01 74.5% 87.5%
3935895 377.9.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.65 45.0 4.91e-01 74.5% 92.5%
3622162 192.2.1.34 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › CpG_bind_C 0.63 58.0 3.78e-01 100.0% 32.5%
3270427 2005.1.1.13 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.61 53.0 3.60e-01 96.1% 82.7%
1621265 2007.5.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.61 52.0 3.07e-01 100.0% 12.5%
4021163 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.61 49.0 3.15e-01 90.2% 41.2%
3987428 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.60 50.0 3.90e-01 88.2% 56.0%
3478669 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.58 49.0 3.46e-01 96.1% 31.0%
4026332 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.54 35.0 2.69e-01 86.3% 26.4%
D2 medium residues 94-177
PDB
Domain cluster: rep: IMGVR_UViG_3300009688_000628-3300009688-Ga0116176_100039164__D9-100
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05766.19 best NinG 63.8 2.70e-17 97.6% 37.3%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cyfA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.51 40.0 3.10e-01 84.5% 97.3%
4f3vB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 40.0 2.93e-01 90.5% 59.2%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944337 378.1.1.28 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NinG 0.92 88.0 7.30e-01 100.0% 66.7%
3976723 378.1.1.28 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NinG 0.92 85.0 7.24e-01 100.0% 65.6%
3839237 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.79 65.0 5.12e-01 89.3% 57.6%
5080395 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.77 54.0 4.82e-01 72.6% 60.9%
5082962 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.74 66.0 6.05e-01 100.0% 80.0%
3963335 378.1.1.9 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.64 52.0 4.52e-01 88.1% 76.7%
3520674 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 45.0 2.77e-01 92.9% 46.8%