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MG592537.1__AUR92174.1__NVP1170O_061__00061

Bact-Vir

MG592537.1__AUR92174.1__NVP1170O_061__00061

Identity

Accession:
MG592537 ↗
Kingdom:
phage

Quality

76.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.170.O._10N.261.52.C3

TaxID: 1881390

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-49
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 58.0 5.81e-01 100.0% 82.0%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.73 64.0 4.68e-01 100.0% 55.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 4.91e-01 100.0% 63.5%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 61.0 5.38e-01 100.0% 70.8%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 48.0 4.61e-01 81.2% 62.5%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 58.0 5.13e-01 100.0% 65.3%
3mtsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 46.0 4.25e-01 81.2% 54.8%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 57.0 4.70e-01 100.0% 52.7%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 47.0 4.22e-01 93.8% 52.9%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 5.00e-01 100.0% 66.7%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 45.0 3.88e-01 79.2% 45.6%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 4.48e-01 100.0% 65.1%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 50.0 4.54e-01 100.0% 65.2%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 43.0 3.83e-01 85.4% 47.3%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 50.0 4.81e-01 100.0% 76.8%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.63 50.0 3.25e-01 95.8% 31.2%
2n88A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 44.0 4.24e-01 85.4% 63.8%
2l8oA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 43.0 3.19e-01 100.0% 25.7%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 45.0 3.28e-01 85.4% 27.3%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 47.0 3.68e-01 93.8% 39.6%
1lv9A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 44.0 4.16e-01 95.8% 64.1%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 48.0 3.08e-01 95.8% 30.5%
6krwA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 46.0 2.98e-01 97.9% 27.9%
1g6zA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 40.0 3.64e-01 72.9% 50.0%
4hj1B03 2.60.40.3770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 42.0 3.57e-01 81.2% 66.7%
4uxuA00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.57 42.0 2.82e-01 81.2% 45.7%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.57 42.0 3.77e-01 87.5% 54.1%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.00e-01 100.0% 66.7%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 46.0 3.77e-01 91.7% 56.5%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 40.0 3.39e-01 100.0% 40.6%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.56 40.0 3.27e-01 89.6% 77.6%
7mwzD01 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.56 44.0 3.09e-01 93.8% 32.8%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.38e-01 100.0% 65.4%
7jrmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 4.02e-01 97.9% 68.9%
6secA03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 42.0 2.75e-01 100.0% 31.7%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 37.0 3.43e-01 91.7% 52.2%
6f7bA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 36.0 2.28e-01 87.5% 11.6%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.53 42.0 3.50e-01 89.6% 75.3%
2m2lA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 37.0 3.46e-01 83.3% 56.7%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 37.0 3.57e-01 93.8% 62.3%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.31e-01 100.0% 81.7%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.52 37.0 2.97e-01 79.2% 80.0%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 40.0 3.91e-01 100.0% 78.0%
1u5qA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 38.0 3.16e-01 93.8% 41.7%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.12e-01 100.0% 69.6%
1z0sA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.51 39.0 3.14e-01 97.9% 59.2%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.38e-01 100.0% 49.5%
2braA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 39.0 2.32e-01 95.8% 82.0%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3570369 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 59.0 4.83e-01 100.0% 46.7%
4213539 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 57.0 5.16e-01 100.0% 61.5%
3732196 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.72 50.0 4.66e-01 79.2% 58.3%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.72 55.0 4.98e-01 100.0% 61.5%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.72 55.0 5.00e-01 100.0% 61.5%
3580428 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 58.0 5.40e-01 89.6% 86.7%
4146937 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 55.0 4.99e-01 100.0% 61.5%
3695974 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.70 48.0 4.67e-01 81.2% 63.6%
4609873 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.70 49.0 3.60e-01 81.2% 27.7%
3198780 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 51.0 4.61e-01 89.6% 55.9%
3707929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 3.93e-01 100.0% 27.5%
3391025 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.69 48.0 4.68e-01 91.7% 65.5%
3991082 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.69 47.0 4.34e-01 91.7% 53.8%
3445382 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.69 47.0 4.96e-01 81.2% 85.0%
3928860 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.69 48.0 4.46e-01 79.2% 58.3%
3470007 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.69 49.0 4.50e-01 91.7% 56.9%
3399675 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.69 49.0 4.47e-01 91.7% 56.9%
3923639 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.69 49.0 4.49e-01 91.7% 57.8%
3770804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 60.0 4.97e-01 100.0% 62.4%
3582655 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.68 48.0 3.92e-01 91.7% 40.0%
4024736 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.68 47.0 4.33e-01 91.7% 55.4%
5061113 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.68 55.0 5.34e-01 100.0% 81.8%
3927367 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.67 49.0 4.36e-01 91.7% 54.3%
3301217 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.67 46.0 4.13e-01 83.3% 50.0%
4549698 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.67 58.0 4.69e-01 100.0% 51.6%
4357452 4.8.1.29 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SH3_AEBP2_C 0.66 45.0 3.67e-01 77.1% 35.8%
3721364 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.66 56.0 4.22e-01 95.8% 42.6%
4392916 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.65 44.0 2.97e-01 75.0% 19.4%
3221229 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.87e-01 100.0% 84.4%
3576152 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.64 52.0 3.22e-01 93.8% 28.8%
3469035 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 48.0 4.53e-01 91.7% 66.7%
3894324 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.64 48.0 4.39e-01 95.8% 61.5%
3570784 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.64 48.0 3.99e-01 85.4% 57.8%
1840989 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.63 48.0 4.05e-01 85.4% 47.7%
3679520 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.63 51.0 3.69e-01 93.8% 57.3%
163064 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.63 43.0 3.83e-01 85.4% 47.3%
3552969 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.62 53.0 4.43e-01 97.9% 68.2%
3742844 2003.1.2.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.62 53.0 3.08e-01 100.0% 31.9%
4015016 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 51.0 4.53e-01 100.0% 62.7%
3221233 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 44.0 4.53e-01 100.0% 86.7%
3313853 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.61 52.0 3.06e-01 100.0% 34.2%
3187166 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.61 50.0 4.29e-01 100.0% 55.3%
3689299 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 52.0 4.04e-01 100.0% 45.5%
3361070 2003.1.2.102 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 0.61 51.0 3.01e-01 100.0% 33.8%
3652990 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.61 45.0 3.76e-01 85.4% 44.4%
4623221 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.59 50.0 3.15e-01 100.0% 43.6%
3281218 3812.1.1.0 ↗ alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE 0.59 49.0 3.65e-01 95.8% 36.3%
3808930 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.58 43.0 3.13e-01 79.2% 32.1%
3177347 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 46.0 2.92e-01 100.0% 31.5%
3424085 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.58 47.0 2.93e-01 100.0% 22.1%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.57 43.0 4.11e-01 100.0% 69.2%
4284764 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.56 45.0 4.20e-01 97.9% 83.1%
3934544 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 43.0 2.75e-01 97.9% 14.8%
2539033 922.1.1.3 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_CCN 0.53 36.0 3.63e-01 70.8% 73.9%
3929294 216.1.1.17 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C 0.53 40.0 3.22e-01 97.9% 36.6%
3927236 216.1.1.17 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C 0.53 39.0 3.07e-01 97.9% 32.8%
3630547 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 41.0 2.60e-01 100.0% 14.8%
3624726 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 40.0 2.56e-01 100.0% 13.6%
3170205 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.52 41.0 3.02e-01 100.0% 28.2%
4507137 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 42.0 2.46e-01 100.0% 9.5%
3987754 4353.1.1.1 ↗ a/b three-layered sandwiches › C-terminal domain in CAC2185-like proteins › C-terminal domain in CAC2185-like proteins › C-terminal domain in CAC2185-like proteins › DUF1919 0.51 41.0 2.81e-01 93.8% 30.8%
3215706 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 35.0 2.24e-01 81.2% 13.6%