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MG592537.1__AUR92277.1__NVP1170O_164__00164

Bact-Vir

MG592537.1__AUR92277.1__NVP1170O_164__00164

Identity

Accession:
MG592537 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.170.O._10N.261.52.C3

TaxID: 1881390

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-82
PDB
Domain cluster: rep: PH2015_10_scaffold_0_prodigal-single.1__X__X__00226__D38-86
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.80 68.0 6.75e-01 100.0% 90.9%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 65.0 6.35e-01 100.0% 86.2%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 4.97e-01 100.0% 73.2%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.65 51.0 5.23e-01 92.5% 96.2%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 56.0 4.15e-01 100.0% 55.6%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 50.0 3.26e-01 88.7% 61.3%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.92e-01 100.0% 85.7%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 48.0 2.88e-01 86.8% 35.6%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.62 45.0 3.55e-01 79.2% 57.9%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 52.0 3.15e-01 92.5% 24.6%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 4.25e-01 100.0% 71.2%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.61e-01 94.3% 81.4%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 43.0 4.25e-01 77.4% 100.0%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.61 48.0 3.74e-01 90.6% 83.1%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 5.06e-01 100.0% 100.0%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.59 47.0 3.56e-01 92.5% 84.8%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.58 48.0 4.87e-01 100.0% 100.0%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.58 49.0 4.07e-01 100.0% 78.8%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 4.05e-01 96.2% 67.4%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.58 39.0 3.44e-01 71.7% 88.4%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.57 49.0 3.72e-01 100.0% 63.9%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 3.78e-01 77.4% 70.3%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.55 43.0 2.76e-01 90.6% 39.1%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.55 45.0 4.46e-01 92.5% 94.6%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.43e-01 94.3% 60.3%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.24e-01 100.0% 81.2%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 2.72e-01 100.0% 42.0%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 36.0 3.82e-01 71.7% 91.1%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 46.0 3.26e-01 100.0% 32.6%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.67e-01 84.9% 68.4%
2qsvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.28e-01 84.9% 88.4%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 47.0 3.27e-01 100.0% 33.5%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.41e-01 100.0% 64.2%
3brnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 42.0 3.06e-01 86.8% 69.6%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.07e-01 100.0% 97.1%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.43e-01 100.0% 40.9%
1cw1A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.52 40.0 2.40e-01 84.9% 16.9%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 3.18e-01 100.0% 33.7%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 38.0 3.11e-01 86.8% 91.9%
4i0wD02 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.43e-01 100.0% 55.4%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.42e-01 100.0% 66.1%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 41.0 3.74e-01 100.0% 67.1%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 36.0 2.75e-01 81.1% 43.7%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 43.0 3.35e-01 100.0% 43.2%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 43.0 3.17e-01 100.0% 36.7%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.50 41.0 3.20e-01 100.0% 94.7%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 62.0 5.27e-01 100.0% 61.1%
4387111 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 61.0 5.40e-01 100.0% 82.5%
5052753 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.70 54.0 3.92e-01 86.8% 75.0%
4966592 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.69 47.0 4.68e-01 100.0% 69.1%
3953959 4.1.1.424 ↗ beta barrels › SH3 › SH3 › SH3 › PF29823 0.68 52.0 5.36e-01 88.7% 100.0%
3470252 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.67 53.0 4.27e-01 90.6% 93.6%
4870495 304.169.1.1 ↗ a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WYL 0.67 56.0 4.55e-01 100.0% 50.9%
3602511 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 4.91e-01 100.0% 72.9%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.19e-01 100.0% 84.6%
3629536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.54e-01 100.0% 54.7%
3890418 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.64 55.0 4.51e-01 100.0% 76.2%
5026284 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.64 54.0 4.55e-01 100.0% 64.2%
3828854 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.62 53.0 4.06e-01 100.0% 63.7%
4966388 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.62 43.0 3.73e-01 73.6% 55.3%
3547089 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 48.0 4.18e-01 100.0% 53.3%
3480822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 5.18e-01 100.0% 100.0%
3258610 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.68e-01 100.0% 68.8%
3936730 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 54.0 4.28e-01 100.0% 74.5%
3767975 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.62 53.0 4.24e-01 100.0% 73.6%
3471615 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.61 52.0 4.14e-01 100.0% 73.0%
3957008 5.1.3.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.61 50.0 3.53e-01 92.5% 42.4%
3408588 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.61 50.0 4.65e-01 100.0% 72.9%
3241067 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.17e-01 100.0% 81.8%
4949773 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.61 51.0 3.85e-01 100.0% 37.2%
3690811 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.60 51.0 4.25e-01 100.0% 77.0%
3750640 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.60 51.0 4.13e-01 100.0% 74.5%
3774692 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.60 51.0 4.53e-01 100.0% 73.8%
3941320 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.59 51.0 4.61e-01 100.0% 72.0%
4059006 9.9.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB 0.59 50.0 3.87e-01 98.1% 100.0%
3742084 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.59 49.0 3.60e-01 100.0% 46.7%
3913637 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.59 50.0 4.27e-01 100.0% 65.6%
3242544 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 3.74e-01 100.0% 66.9%
3888349 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.58 49.0 3.79e-01 100.0% 91.5%
3226827 4.1.1.133 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.58 49.0 4.02e-01 100.0% 51.4%
1758949 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.58 48.0 3.70e-01 100.0% 59.6%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 48.0 4.69e-01 100.0% 90.0%
169967 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.57 49.0 3.72e-01 100.0% 63.4%
4980041 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 41.0 4.32e-01 83.0% 93.3%
3998942 220.1.1.162 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31014 0.56 46.0 3.57e-01 96.2% 78.5%
3704395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.41e-01 100.0% 87.5%
3511551 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.51e-01 96.2% 88.3%
4030473 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 2.84e-01 98.1% 37.0%
3845542 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.55 43.0 3.77e-01 100.0% 82.0%
3271259 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 39.0 3.48e-01 83.0% 89.4%
3331569 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.53 43.0 4.31e-01 96.2% 90.9%
3457163 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.53 42.0 3.85e-01 100.0% 68.8%
4030625 219.1.1.97 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.52 45.0 2.99e-01 100.0% 34.3%
3385762 4951.1.1.0 ↗ alpha arrays › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit 0.52 39.0 3.53e-01 86.8% 82.5%
4197307 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.52 43.0 3.17e-01 100.0% 87.3%
3246889 11.1.5.67 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CLSTN_C 0.52 45.0 3.40e-01 100.0% 59.2%
3516127 11.1.1.882 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TPPC8_C 0.51 46.0 3.45e-01 100.0% 56.0%
3282756 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 44.0 3.33e-01 100.0% 41.5%
143267 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.51 38.0 3.07e-01 90.6% 87.4%
3953652 4317.1.1.0 ↗ a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like 0.50 38.0 3.60e-01 83.0% 81.5%
5061695 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 3.24e-01 83.0% 93.3%