←Back to structures

MG592537.1__AUR92301.1__NVP1170O_188__00188

Bact-Vir

MG592537.1__AUR92301.1__NVP1170O_188__00188

Identity

Accession:
MG592537 ↗
Kingdom:
phage

Quality

71.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.170.O._10N.261.52.C3

TaxID: 1881390

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-66
PDB
Domain cluster: rep: NC_041917.1__YP_009599885.1__FDH34_gp531__00389__D8-61
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26882.1 best Phage_T4_Y11B 28.7 1.90e-06 89.8% 52.7%
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.66 48.0 4.14e-01 88.1% 48.4%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.66 49.0 3.53e-01 81.4% 38.6%
2jacA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 56.0 4.67e-01 100.0% 75.9%
4mzcA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 56.0 4.69e-01 100.0% 75.5%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.64 53.0 4.45e-01 93.2% 90.3%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 48.0 3.37e-01 83.1% 46.5%
2fa8B00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 53.0 4.77e-01 100.0% 78.2%
6inxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.62 38.0 3.70e-01 71.2% 55.4%
2iz4A02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 39.0 4.37e-01 81.4% 90.5%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 46.0 4.02e-01 89.8% 66.3%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 39.0 3.40e-01 72.9% 43.3%
3hkoA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.60 40.0 2.74e-01 71.2% 41.6%
2ltkA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 49.0 4.32e-01 100.0% 78.4%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 37.0 3.52e-01 71.2% 52.1%
2fkiA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.58 47.0 3.83e-01 91.5% 80.5%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 36.0 4.12e-01 81.4% 94.9%
2vseA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 49.0 3.79e-01 98.3% 83.7%
4bkwA03 3.30.500.40 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.58 45.0 3.64e-01 88.1% 55.6%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 48.0 3.76e-01 98.3% 82.5%
1n91A00 3.30.1200.10 Alpha Beta › 2-Layer Sandwich › Conserved Hypothetical Protein Mth637; Chain: A; › YggU-like 0.58 44.0 3.64e-01 96.6% 45.4%
1ybiA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 48.0 3.76e-01 98.3% 87.9%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 40.0 2.78e-01 76.3% 20.7%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 48.0 3.08e-01 96.6% 29.9%
3o46A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 39.0 3.54e-01 74.6% 92.9%
4i6xA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 45.0 3.83e-01 100.0% 70.1%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.55 41.0 4.05e-01 86.4% 92.6%
4dwsA01 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 39.0 3.10e-01 76.3% 97.6%
4r0mB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.55 45.0 2.78e-01 96.6% 77.0%
3iv4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 44.0 3.78e-01 100.0% 72.3%
5bulA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 37.0 2.32e-01 74.6% 83.9%
2pptA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 43.0 3.77e-01 100.0% 72.6%
3tcoA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 43.0 3.75e-01 100.0% 71.7%
5yh4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 44.0 3.23e-01 98.3% 88.8%
2j6aA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 39.0 3.13e-01 83.1% 93.4%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.52 43.0 2.75e-01 100.0% 22.6%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.71e-01 96.6% 78.8%
3eagA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 41.0 2.80e-01 86.4% 83.1%
3upsA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 42.0 3.52e-01 93.2% 79.6%
3sqiA02 1.10.443.20 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Centromere DNA-binding protein complex CBF3 subunit, domain 2 0.52 38.0 2.49e-01 81.4% 47.9%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.51 35.0 3.60e-01 96.6% 77.2%
1mkyA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 3.25e-01 100.0% 94.7%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 42.0 2.74e-01 100.0% 81.4%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.50 41.0 3.17e-01 93.2% 65.8%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 40.0 2.76e-01 96.6% 39.5%
3weeB03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.50 37.0 3.10e-01 83.1% 94.8%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4336160 319.1.1.21 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › GvpH 0.73 48.0 4.32e-01 74.6% 48.8%
5028555 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.69 54.0 5.27e-01 86.4% 87.7%
4984000 231.1.1.1 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1 0.69 56.0 3.26e-01 91.5% 18.1%
1170594 885.1.1.1 ↗ a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N 0.66 48.0 4.14e-01 88.1% 48.4%
3715372 6110.1.1.1 ↗ alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.66 53.0 3.40e-01 93.2% 22.2%
3974974 241.13.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › SopD 0.66 46.0 3.61e-01 72.9% 35.8%
3175415 211.1.1.55 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › PF29700 0.64 44.0 4.41e-01 76.3% 70.0%
4990786 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.63 52.0 3.96e-01 96.6% 44.0%
3943200 159.1.4.3 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Type II deoxyuridine triphosphatase-related › PRA-PH 0.62 48.0 3.15e-01 89.8% 19.2%
4447732 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.62 50.0 3.26e-01 94.9% 27.7%
1684841 241.13.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › SopD 0.62 43.0 3.83e-01 72.9% 50.6%
3385564 7528.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I 0.62 47.0 3.60e-01 84.7% 73.1%
3476821 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.62 43.0 2.78e-01 74.6% 47.7%
3498865 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.62 53.0 3.36e-01 100.0% 94.5%
3335997 5.3.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.61 46.0 3.64e-01 83.1% 94.6%
4411256 2004.1.1.80 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.61 48.0 3.29e-01 91.5% 28.6%
4406214 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.60 43.0 3.76e-01 78.0% 86.0%
3260311 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.59 51.0 2.98e-01 98.3% 73.7%
4449615 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.59 44.0 3.90e-01 83.1% 87.8%
4945596 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.59 41.0 4.60e-01 98.3% 95.6%
4937515 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.58 40.0 3.51e-01 71.2% 50.0%
3466109 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.58 42.0 2.70e-01 79.7% 73.0%
3840475 304.9.1.104 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_PARP14_2 0.56 45.0 3.89e-01 86.4% 68.9%
3947154 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.56 41.0 3.71e-01 83.1% 87.8%
3297758 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.55 49.0 3.59e-01 100.0% 78.8%
3217951 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.42e-01 94.9% 47.3%
1631501 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.55 34.0 2.18e-01 81.4% 12.1%
4236664 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.55 40.0 3.01e-01 81.4% 60.6%
2560670 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.54 38.0 3.30e-01 76.3% 89.1%
3351647 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.54 44.0 3.56e-01 91.5% 84.2%
None — 0.54 44.0 3.14e-01 94.9% 76.1%
4040812 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.54 39.0 3.57e-01 83.1% 88.8%
3352485 2007.5.1.17 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase 0.54 42.0 2.81e-01 86.4% 92.5%
5047010 2008.1.1.63 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MvaI_BcnI 0.54 43.0 2.84e-01 84.7% 63.1%
3927052 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.54 42.0 3.40e-01 81.4% 65.2%
4379527 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.54 39.0 3.61e-01 83.1% 92.9%
1878466 59.1.4.1 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N 0.53 41.0 3.65e-01 89.8% 89.6%
3334023 5.3.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.53 41.0 3.34e-01 93.2% 99.3%
5067171 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.52 42.0 4.17e-01 100.0% 93.8%
3832146 304.8.1.68 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF493 0.52 41.0 3.66e-01 94.9% 72.6%
3643064 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.52 44.0 3.07e-01 98.3% 42.9%
3621466 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 40.0 2.55e-01 91.5% 94.1%
4989851 2007.1.5.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like 0.51 43.0 3.12e-01 100.0% 52.3%
3238722 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.51 37.0 2.44e-01 81.4% 85.1%
3617650 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 41.0 2.83e-01 93.2% 70.0%
3497279 59.1.4.0 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 0.51 39.0 2.98e-01 84.7% 61.3%
3311237 304.52.1.1 ↗ a+b two layers › Alpha-beta plaits › YbeD/HP0495-like › YbeD/HP0495-like › DUF493 0.51 41.0 3.64e-01 93.2% 74.4%
3303185 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.50 41.0 3.18e-01 96.6% 78.7%
3936775 59.1.4.1 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N 0.50 39.0 2.95e-01 88.1% 50.0%
3499437 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 42.0 2.84e-01 100.0% 27.5%
3993351 70.3.1.0 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like 0.50 40.0 2.58e-01 94.9% 72.5%