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MG592549.1__AUR93115.1__NVP1183O_17__00017

Bact-Vir

MG592549.1__AUR93115.1__NVP1183O_17__00017

Identity

Accession:
MG592549 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.183.O._10N.286.48.B7

TaxID: 1881391

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-84
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.67 41.0 4.16e-01 74.7% 60.7%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.63 41.0 3.98e-01 72.3% 59.3%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 45.0 4.36e-01 97.6% 67.0%
1jc4A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 38.0 3.15e-01 71.1% 35.2%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 36.0 4.14e-01 74.7% 81.7%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 41.0 4.06e-01 98.8% 64.8%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 43.0 4.60e-01 97.6% 90.0%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.59 50.0 4.77e-01 92.8% 94.8%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.59 41.0 3.68e-01 72.3% 97.3%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 52.0 4.82e-01 100.0% 82.4%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 4.08e-01 100.0% 79.2%
1w7cA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 49.0 4.43e-01 95.2% 83.5%
5w3xD01 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.57 34.0 3.80e-01 85.5% 75.4%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.57 38.0 3.59e-01 100.0% 54.8%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 41.0 4.40e-01 96.4% 91.3%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 39.0 3.31e-01 74.7% 91.2%
3bg3A01 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.54 33.0 3.18e-01 75.9% 49.5%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.54 47.0 4.20e-01 97.6% 74.4%
3bghB01 3.30.160.180 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain 0.54 48.0 3.78e-01 98.8% 91.2%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 3.82e-01 100.0% 87.1%
2joxA00 2.60.40.4240 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill 0.52 42.0 3.86e-01 95.2% 67.9%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 43.0 3.17e-01 95.2% 70.4%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.58e-01 100.0% 70.0%
3at0A02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 3.59e-01 100.0% 96.4%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.50 40.0 3.49e-01 100.0% 56.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965322 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 76.0 7.25e-01 100.0% 93.7%
3173730 222.1.1.27 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.66 47.0 3.85e-01 74.7% 90.3%
3330367 9.2.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N 0.64 56.0 4.37e-01 100.0% 78.9%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.64 44.0 4.59e-01 98.8% 80.0%
3781112 3561.1.1.1 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.63 48.0 2.96e-01 95.2% 13.8%
3313682 708.1.1.2 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › WRKY 0.62 39.0 4.40e-01 89.2% 83.1%
3375728 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.62 50.0 4.31e-01 91.6% 86.4%
3927171 11.1.1.620 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TMEM132_6th 0.61 42.0 3.58e-01 71.1% 63.7%
3419015 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 36.0 4.36e-01 78.3% 98.0%
4957795 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.60 42.0 3.87e-01 95.2% 55.5%
3918404 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.59 47.0 4.78e-01 95.2% 88.7%
3912662 5.1.3.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.58 46.0 3.01e-01 88.0% 93.7%
3887472 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 52.0 4.73e-01 100.0% 80.9%
3825504 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.58 45.0 4.38e-01 97.6% 77.8%
4962543 2485.2.1.1 ↗ a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.57 43.0 3.96e-01 81.9% 95.5%
3411042 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 37.0 4.12e-01 89.2% 93.3%
3177469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 39.0 4.12e-01 98.8% 85.7%
3222974 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 43.0 4.06e-01 97.6% 66.7%
3743024 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.56 45.0 3.96e-01 88.0% 82.4%
4883064 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.56 35.0 2.51e-01 74.7% 21.8%
3998371 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.55 49.0 3.69e-01 98.8% 48.5%
4096366 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.55 42.0 3.76e-01 96.4% 56.8%
4660860 2484.1.1.222 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UPF0236 0.55 42.0 3.05e-01 88.0% 37.1%
3484700 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.54 37.0 3.49e-01 100.0% 58.0%
3562593 4026.1.1.1 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.54 47.0 3.83e-01 100.0% 50.6%
5054047 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 36.0 3.76e-01 92.8% 76.0%
4987033 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.53 39.0 3.68e-01 83.1% 62.9%
3238811 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 45.0 3.07e-01 100.0% 25.1%
4785457 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.53 43.0 2.92e-01 90.4% 73.8%
3283746 330.1.1.16 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DUF6968 0.53 43.0 4.44e-01 100.0% 97.5%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.53 36.0 3.83e-01 100.0% 85.7%
5044523 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.84e-01 83.1% 88.0%
3309411 11.1.1.651 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_2nd 0.52 40.0 3.68e-01 83.1% 91.8%
3498587 219.1.1.97 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.52 37.0 2.72e-01 100.0% 26.4%
3263743 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.52 46.0 4.06e-01 100.0% 93.6%
3653232 11.1.1.651 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_2nd 0.51 36.0 3.43e-01 73.5% 93.0%
3631282 101.1.8.10 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3435 0.51 42.0 3.33e-01 91.6% 73.9%
4024905 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 40.0 2.91e-01 84.3% 59.6%
4529976 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.50 39.0 3.92e-01 84.3% 80.0%
3929989 330.16.1.2 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain › KAP 0.50 38.0 3.78e-01 95.2% 78.8%