←Back to structures

MG592553.1__AUR93328.1__NVP1187O_015__00015

Bact-Vir

MG592553.1__AUR93328.1__NVP1187O_015__00015

Identity

Accession:
MG592553 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.187.O._10N.286.49.F1

TaxID: 1881434

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-80
PDB
Domain cluster: rep: IMGVR_UViG_3300020814_000341-3300020814-Ga0214088_182449121__D33-91
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4uopA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.61 38.0 3.63e-01 72.4% 51.6%
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.57 41.0 3.09e-01 75.0% 70.8%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.55 47.0 4.19e-01 100.0% 96.5%
4iq0C02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 38.0 2.94e-01 75.0% 63.5%
4hwtA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.52 43.0 3.84e-01 92.1% 78.2%
2o6yA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.52 44.0 3.30e-01 93.4% 52.3%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.55e-01 80.3% 65.9%
1vccA00 3.30.66.10 Alpha Beta › 2-Layer Sandwich › Viral Topoisomerase I › DNA topoisomerase I domain 0.52 40.0 4.07e-01 86.8% 96.1%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.52 38.0 2.92e-01 80.3% 67.0%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 35.0 3.07e-01 71.1% 99.1%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.77e-01 80.3% 84.8%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4152656 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.60 48.0 2.76e-01 89.5% 13.8%
3588456 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.55 39.0 3.10e-01 73.7% 78.7%
4965674 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 31.0 3.65e-01 75.0% 88.0%
4964421 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 37.0 3.95e-01 80.3% 86.2%
3949593 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.53 44.0 4.12e-01 92.1% 90.4%
5028692 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 37.0 3.95e-01 80.3% 86.2%
5040230 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.52 36.0 3.86e-01 80.3% 86.2%
5075801 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.51 37.0 2.88e-01 77.6% 83.1%
4977469 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 37.0 3.80e-01 80.3% 82.9%
5059435 2485.1.1.61 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DCC1-like 0.51 44.0 4.16e-01 96.1% 86.7%
None — 0.50 40.0 2.45e-01 90.8% 29.7%