←Back to structures

MG592553.1__AUR93414.1__NVP1187O_101__00101

Bact-Vir

MG592553.1__AUR93414.1__NVP1187O_101__00101

Identity

Accession:
MG592553 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.187.O._10N.286.49.F1

TaxID: 1881434

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-74
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x9mA03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.88 70.0 4.66e-01 86.0% 27.5%
1di0A00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.74 58.0 4.12e-01 86.0% 91.9%
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.62 43.0 3.08e-01 74.0% 63.1%
2c42A01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.60 43.0 2.81e-01 80.0% 47.1%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3235312 310.3.1.12 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › LMBR1 0.85 75.0 4.87e-01 94.0% 54.2%
D2 high residues 79-161
PDB
Domain cluster: rep: IMGVR_UViG_3300031933_000299-3300031933-Ga0326349_100026814__D58-120
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 50.0 3.62e-01 90.4% 64.4%
3hunA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 48.0 3.33e-01 89.2% 89.0%
5a67A00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.59 46.0 3.49e-01 85.5% 78.6%
8hmcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 44.0 3.01e-01 84.3% 99.1%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 48.0 3.86e-01 95.2% 82.4%
1e25A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 45.0 3.17e-01 90.4% 87.1%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.55 34.0 3.18e-01 97.6% 47.2%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 35.0 3.99e-01 73.5% 96.5%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 3.73e-01 100.0% 79.2%
5jciA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.53 34.0 3.32e-01 90.4% 59.6%
2xepB02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 42.0 3.07e-01 89.2% 86.3%
1v5vA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.53 38.0 3.73e-01 80.7% 68.5%
2zfdB00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.52 45.0 4.09e-01 100.0% 78.4%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 3.72e-01 80.7% 76.8%
2ownA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 42.0 3.07e-01 94.0% 86.7%
2q03A00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.51 38.0 3.39e-01 83.1% 96.2%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 38.0 3.64e-01 81.9% 84.3%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.51 37.0 3.52e-01 77.1% 70.8%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 34.0 3.46e-01 78.3% 72.2%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 44.0 3.89e-01 95.2% 72.9%
2basA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 42.0 3.76e-01 91.6% 82.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3755587 5.1.4.267 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF28639 0.59 47.0 3.02e-01 90.4% 92.4%
3968338 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 48.0 3.92e-01 94.0% 83.9%
5026576 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 40.0 4.01e-01 81.9% 72.9%
4026900 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.56 48.0 4.34e-01 97.6% 76.5%
3278719 881.1.1.15 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.55 47.0 4.00e-01 95.2% 75.0%
5074169 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.54 41.0 3.71e-01 83.1% 81.7%
3286940 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.54 40.0 3.42e-01 79.5% 99.3%
3169357 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 43.0 3.98e-01 89.2% 74.5%
3175084 5.1.4.115 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CRT10 0.53 43.0 2.74e-01 90.4% 95.6%
3601966 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.53 43.0 3.89e-01 89.2% 71.3%
3933904 5.1.4.333 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF31099 0.53 43.0 2.75e-01 90.4% 94.4%
3784710 5.1.5.213 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF29037 0.52 41.0 2.66e-01 90.4% 87.4%
3978908 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 43.0 3.15e-01 94.0% 54.8%
6840 223.1.1.19 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › YkuI_C 0.51 44.0 3.74e-01 97.6% 82.1%
2319363 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.51 40.0 3.24e-01 85.5% 96.4%
3581460 2007.2.3.21 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.51 45.0 3.10e-01 100.0% 39.3%
3254218 223.2.1.32 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.51 40.0 3.41e-01 86.7% 60.0%
4018561 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.51 43.0 3.62e-01 95.2% 78.6%
4979842 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 43.0 3.80e-01 95.2% 64.8%