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MG592553.1__AUR93475.1__NVP1187O_162__00162
Bact-VirMG592553.1__AUR93475.1__NVP1187O_162__00162
Identity
- Accession:
- MG592553 ↗
- Kingdom:
- phage
Quality
48.0
mean pLDDT
Taxonomy
TaxID: 1881434
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 9-66
D2
medium
residues 72-156
Domain cluster:
rep: KR060090.1__AKN44326.1__X__00043__D11-118
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 24.9 | 2.90e-05 | 77.6% | 94.9% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.89 | 65.0 | 6.42e-01 | 75.3% | 82.0% |
| 2l6oA01 | 2.40.10.320 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain | 0.60 | 34.0 | 3.64e-01 | 100.0% | 63.9% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.55 | 42.0 | 4.33e-01 | 100.0% | 84.1% |
| 3b4vD01 | 3.90.290.10 | Alpha Beta › Alpha-Beta Complex › Extracellular Matrix Fibrillin › TGF-beta binding (TB) domain | 0.55 | 37.0 | 3.94e-01 | 100.0% | 84.3% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5052958 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.92 | 67.0 | 6.96e-01 | 75.3% | 82.5% |
| 4947741 | 821.1.1.17 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 | 0.90 | 65.0 | 6.59e-01 | 75.3% | 87.1% |
| 4945828 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.89 | 68.0 | 6.65e-01 | 78.8% | 88.9% |
| 4515517 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.89 | 66.0 | 6.52e-01 | 77.6% | 86.7% |
| 4236834 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.87 | 67.0 | 6.77e-01 | 80.0% | 89.4% |
| 4310838 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.87 | 64.0 | 6.46e-01 | 76.5% | 89.4% |
| 4994096 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.85 | 70.0 | 6.53e-01 | 87.1% | 78.8% |
| 4974405 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.85 | 65.0 | 6.41e-01 | 80.0% | 86.7% |
| 4929079 | 821.1.1.15 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 | 0.84 | 62.0 | 5.96e-01 | 76.5% | 76.6% |
| 4054044 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.83 | 65.0 | 6.10e-01 | 81.2% | 86.0% |
| 3986774 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.83 | 67.0 | 6.30e-01 | 84.7% | 77.0% |
| 3588392 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.83 | 67.0 | 6.31e-01 | 84.7% | 83.0% |
| 5070656 | 821.1.1.15 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 | 0.82 | 58.0 | 5.83e-01 | 72.9% | 78.8% |
| 5039344 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.81 | 64.0 | 6.40e-01 | 82.4% | 84.7% |
| 4977317 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.81 | 65.0 | 5.67e-01 | 83.5% | 66.4% |
| 4964937 | 821.1.1.15 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 | 0.80 | 50.0 | 5.47e-01 | 92.9% | 77.1% |
| 4929482 | 3769.1.1.0 ↗ | 0.68 | 36.0 | 4.72e-01 | 71.8% | 97.8% | |
| 4931929 | 821.1.1.14 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 | 0.61 | 54.0 | 5.37e-01 | 100.0% | 97.8% |
| 4179371 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.60 | 50.0 | 3.59e-01 | 91.8% | 95.9% |
| 3606070 | 7032.1.1.0 ↗ | a+b two layers › Paratox › Paratox › Paratox | 0.59 | 39.0 | 4.44e-01 | 72.9% | 95.0% |
| 4180988 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.56 | 47.0 | 3.41e-01 | 91.8% | 94.7% |
| 5069642 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.53 | 48.0 | 3.53e-01 | 100.0% | 73.2% |
| 4212379 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.51 | 46.0 | 3.28e-01 | 100.0% | 72.9% |
D3
medium
residues 253-363