Back to structures

MG592553.1__AUR93538.1__NVP1187O_225__00225

Bact-Vir

MG592553.1__AUR93538.1__NVP1187O_225__00225

Identity

Accession:
MG592553 ↗
Kingdom:
phage

Quality

81.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-125
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25856.2 best MPN635_N 34.0 3.10e-08 67.5% 71.0%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4zglD00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.57 37.0 3.92e-01 94.2% 74.5%
4ipeB02 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.57 47.0 4.28e-01 90.0% 91.5%
1gupB01 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.55 39.0 3.46e-01 99.2% 51.2%
1a6fA00 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 40.0 4.16e-01 86.7% 90.3%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928985 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.59 49.0 4.62e-01 90.8% 92.7%
3223062 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.59 48.0 4.43e-01 90.0% 100.0%
4094312 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.57 48.0 4.49e-01 93.3% 100.0%
4289958 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.57 47.0 4.38e-01 90.8% 100.0%
4947780 212.1.1.22 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.57 46.0 3.80e-01 87.5% 68.6%
3358676 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.57 46.0 4.17e-01 89.2% 81.8%
3597401 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.57 47.0 4.38e-01 90.0% 100.0%
149483 312.1.1.8 a+b three layers › HIT-like › HIT-related › HIT-related › DcpS_C 0.55 37.0 3.80e-01 95.8% 69.5%
2323907 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.55 44.0 3.61e-01 86.7% 82.4%
2123278 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.55 47.0 4.32e-01 96.7% 96.3%
3869716 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.55 44.0 4.14e-01 87.5% 73.3%
4424690 212.1.1.1 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.54 46.0 4.41e-01 93.3% 97.1%
5027858 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.54 44.0 4.43e-01 86.7% 98.3%
3246869 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.54 44.0 3.50e-01 86.7% 75.8%
4942898 312.1.1.2 a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.53 34.0 3.39e-01 93.3% 60.0%
3310887 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.53 42.0 4.17e-01 85.0% 88.0%
3557551 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.53 43.0 4.22e-01 87.5% 83.1%
4176825 312.1.1.2 a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.53 36.0 3.73e-01 98.3% 73.0%
2446732 312.1.1.2 a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.52 36.0 3.39e-01 95.0% 58.6%
D2 medium residues 230-263
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gouA01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.89 76.0 4.95e-01 100.0% 25.7%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.89 75.0 5.55e-01 100.0% 37.8%
1y6xA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.84 70.0 5.25e-01 100.0% 39.1%
4jcsA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.82 69.0 5.79e-01 100.0% 54.8%
2xkoC02 6.10.250.870 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.81 66.0 6.54e-01 97.1% 89.2%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.81 66.0 5.07e-01 100.0% 43.7%
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.81 62.0 5.68e-01 100.0% 64.6%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.80 65.0 4.53e-01 100.0% 27.4%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.80 63.0 5.58e-01 100.0% 59.6%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.80 65.0 5.87e-01 100.0% 66.7%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.79 64.0 5.06e-01 100.0% 44.3%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.78 60.0 4.80e-01 85.3% 46.3%
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.78 63.0 5.90e-01 100.0% 73.9%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.77 59.0 4.30e-01 100.0% 29.1%
4jvtA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.77 64.0 6.15e-01 100.0% 82.9%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.76 61.0 4.77e-01 100.0% 41.2%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 62.0 5.31e-01 100.0% 65.0%
4jfcA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.76 61.0 5.37e-01 100.0% 60.7%
1n0uA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 63.0 3.83e-01 94.1% 64.8%
2ra1A02 1.20.58.780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 59.0 4.95e-01 100.0% 51.5%
3r2kA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.74 58.0 3.92e-01 100.0% 22.7%
2qvaA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.74 59.0 5.33e-01 100.0% 64.2%
1e52A00 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.74 60.0 5.28e-01 100.0% 60.7%
6he1B01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.73 57.0 4.93e-01 100.0% 53.1%
3k59A06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.73 58.0 5.47e-01 100.0% 72.3%
4cybD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.72 59.0 3.81e-01 100.0% 19.9%
4u04B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 57.0 4.40e-01 97.1% 37.5%
2yfkA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.70 55.0 3.54e-01 100.0% 39.8%
2ffjA02 1.10.285.20 Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 0.69 49.0 3.93e-01 82.4% 38.5%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.69 56.0 4.82e-01 100.0% 55.9%
2keyA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.69 50.0 3.78e-01 100.0% 29.5%
2vx2G02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.66 54.0 4.77e-01 100.0% 61.8%
3vtfA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.66 51.0 3.25e-01 100.0% 15.9%
3l3sA02 1.10.287.2460 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 47.0 4.77e-01 97.1% 91.7%
3p42A02 6.10.250.2280 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.64 52.0 4.31e-01 100.0% 47.1%
1kaeA03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 47.0 4.29e-01 94.1% 61.8%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 48.0 4.07e-01 100.0% 50.0%
4akrA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.58 44.0 3.32e-01 94.1% 34.9%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3473413 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.99 92.0 6.61e-01 100.0% 40.0%
3841270 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.99 91.0 6.53e-01 100.0% 40.0%
3669330 604.1.1.148 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TBCC_N 0.98 90.0 6.48e-01 100.0% 40.0%
3548194 192.2.1.18 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.98 90.0 6.02e-01 100.0% 30.9%
3393794 3922.1.1.211 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DRC7_C 0.97 88.0 5.68e-01 100.0% 25.2%
3484074 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.96 86.0 5.51e-01 100.0% 24.3%
3527434 6006.1.1.6 extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › PF27661 0.95 85.0 5.33e-01 100.0% 21.9%
3941235 4992.1.1.0 extended segments › RelB-like › RelB-like › RelB-like 0.95 85.0 6.00e-01 100.0% 35.8%
4960288 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.95 85.0 5.21e-01 100.0% 19.4%
4977335 604.12.1.139 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF1844 0.94 85.0 6.23e-01 100.0% 41.0%
4369209 4146.1.1.0 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.94 83.0 7.72e-01 100.0% 79.1%
4944639 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.93 80.0 5.74e-01 100.0% 35.8%
3638386 603.1.1.111 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › TBCC_N 0.91 79.0 5.51e-01 100.0% 32.4%
3196270 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.90 78.0 5.34e-01 100.0% 29.6%
3632799 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.89 76.0 5.03e-01 100.0% 25.2%
3393338 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.88 75.0 4.84e-01 100.0% 22.2%
4324096 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.87 72.0 5.45e-01 100.0% 40.0%
3607480 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.86 73.0 4.50e-01 100.0% 16.8%
3797638 3456.1.1.0 extended segments › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A 0.86 71.0 4.94e-01 100.0% 29.6%
3915218 5076.2.1.9 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › Choline_transpo 0.86 71.0 4.16e-01 100.0% 12.1%
2755627 192.26.1.1 alpha bundles › Long alpha-hairpin › Mitoribosomal protein mL51 › Mitoribosomal protein mL51 › MRP-L51 0.84 71.0 5.17e-01 100.0% 35.1%
3478515 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.83 70.0 6.30e-01 100.0% 68.0%
4683095 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.83 66.0 5.23e-01 100.0% 42.5%
3864552 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.83 68.0 4.96e-01 100.0% 34.0%
3212519 192.31.1.0 alpha bundles › Long alpha-hairpin › CP12 › CP12 0.82 67.0 6.67e-01 97.1% 97.1%
3597991 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.82 67.0 3.80e-01 97.1% 9.1%
2394140 1203.1.2.1 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 0.80 65.0 4.19e-01 100.0% 20.1%
4877881 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.78 64.0 6.20e-01 100.0% 85.0%
3785339 3294.1.1.1 alpha complex topology › FAS type I helical domain › FAS type I helical domain › FAS type I helical domain › FAS_I_H 0.67 53.0 3.12e-01 97.1% 10.6%
3512231 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.66 55.0 5.48e-01 94.1% 94.3%
3311542 138.1.1.11 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › RFC_C 0.66 50.0 4.48e-01 100.0% 56.7%