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MG592566.1__AUR94639.1__NVP1197A_01__00001

Bact-Vir

MG592566.1__AUR94639.1__NVP1197A_01__00001

Identity

Accession:
MG592566 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.197.A._10N.286.54.F2

TaxID: 1881256

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-67
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gbvA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 53.0 4.05e-01 96.8% 93.6%
6yuqA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 49.0 3.36e-01 98.4% 76.5%
2ju5A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 42.0 3.40e-01 85.5% 38.7%
6eudA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 45.0 3.45e-01 93.5% 33.3%
1dbrC00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 39.0 2.74e-01 71.0% 21.9%
1xovA01 3.40.630.40 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases 0.58 39.0 2.87e-01 71.0% 28.8%
4cvhA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 46.0 3.14e-01 90.3% 27.0%
1ivnA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.57 46.0 3.47e-01 96.8% 72.5%
4akgA15 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 47.0 3.85e-01 98.4% 65.6%
1fyvA00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.56 44.0 3.40e-01 91.9% 38.5%
2vshA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 44.0 3.10e-01 90.3% 28.7%
1ac1A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 45.0 3.37e-01 98.4% 55.9%
1t3gB00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.55 43.0 3.38e-01 90.3% 38.4%
3brsA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 46.0 3.65e-01 96.8% 94.2%
4xfkA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 45.0 3.20e-01 95.2% 66.0%
3oqbA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 43.0 3.48e-01 91.9% 46.8%
6c5cA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 44.0 3.31e-01 96.8% 73.1%
2bgiA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.53 40.0 3.14e-01 95.2% 35.1%
3crvA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 2.85e-01 91.9% 24.8%
3hskA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 43.0 3.16e-01 98.4% 94.4%
1rrmA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 38.0 2.82e-01 85.5% 45.7%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5069572 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.67 57.0 3.98e-01 100.0% 38.4%
4951729 2004.1.1.1217 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF7125 0.66 56.0 4.07e-01 100.0% 48.6%
5070821 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.65 54.0 3.82e-01 98.4% 38.6%
4997208 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.62 52.0 3.45e-01 100.0% 30.2%
3812402 2002.1.1.19 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_17 0.61 50.0 3.60e-01 96.8% 50.7%
3727025 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.61 48.0 3.28e-01 91.9% 23.5%
4969131 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 50.0 3.89e-01 96.8% 41.3%
3633961 2002.1.1.3 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TIM 0.57 47.0 3.23e-01 98.4% 56.0%
3290907 2007.2.1.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_2 0.57 45.0 3.27e-01 90.3% 43.1%
3949219 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.56 47.0 3.83e-01 98.4% 95.4%
3942137 2007.1.20.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › GD_AH_second 0.55 44.0 3.46e-01 91.9% 71.0%
2754025 7523.1.1.8 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 0.51 36.0 3.02e-01 80.6% 40.7%
3216117 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 40.0 2.94e-01 96.8% 80.0%
D2 high residues 83-149
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cjaA02 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.66 46.0 3.36e-01 73.1% 66.1%
3b0bB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.61 47.0 4.16e-01 82.1% 76.3%
7qi3A01 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.61 42.0 2.67e-01 71.6% 83.3%
7tvyA01 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.61 41.0 3.48e-01 70.1% 48.3%
4maaA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 43.0 3.13e-01 76.1% 68.5%
2rq5A00 1.10.150.60 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain 0.60 43.0 3.58e-01 77.6% 72.7%
4guzA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.59 41.0 2.96e-01 71.6% 72.9%
4eekA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 42.0 4.27e-01 77.6% 78.8%
2cg5B00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.58 39.0 3.83e-01 82.1% 64.8%
2btoA01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.58 41.0 2.83e-01 76.1% 91.2%
1tdjA01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 44.0 3.21e-01 86.6% 77.1%
1yowA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.55 45.0 3.14e-01 92.5% 87.0%
2rghA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 46.0 3.21e-01 98.5% 88.4%
4eeiA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.54 37.0 3.55e-01 77.6% 61.5%
3ezxA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.53 32.0 2.97e-01 89.6% 45.3%
4uqwB00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.52 37.0 2.96e-01 79.1% 98.7%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 38.0 3.07e-01 82.1% 77.3%
3n0xA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 41.0 3.08e-01 98.5% 97.6%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1711659 148.1.3.18 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.69 46.0 4.79e-01 70.1% 74.2%
4599610 102.1.1.5 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_LFY 0.60 42.0 3.71e-01 73.1% 69.5%
3359083 102.1.1.5 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_LFY 0.60 42.0 3.86e-01 73.1% 77.6%
3690869 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 4.54e-01 95.5% 94.7%
3182801 592.2.1.2 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.59 42.0 3.53e-01 79.1% 77.7%
4169130 102.1.1.5 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_LFY 0.59 41.0 3.70e-01 73.1% 73.3%
3723625 592.2.1.2 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.58 44.0 3.58e-01 83.6% 60.7%
4958660 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.57 44.0 3.87e-01 88.1% 76.4%
3816078 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 43.0 3.62e-01 82.1% 96.7%
3480620 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 45.0 3.83e-01 88.1% 95.7%
4937660 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.57 45.0 3.79e-01 88.1% 92.5%
3359 107.1.1.6 ↗ alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Dehyd-heme_bind 0.57 40.0 3.72e-01 74.6% 72.9%
5081699 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.56 39.0 3.66e-01 76.1% 93.3%
4978391 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.56 40.0 3.57e-01 77.6% 85.0%
3969509 3457.1.1.0 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease 0.55 45.0 3.26e-01 92.5% 66.7%
3231161 5067.1.1.3 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched 0.54 44.0 2.50e-01 95.5% 43.4%
3832662 185.1.1.4 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Prolamin_like 0.52 35.0 3.51e-01 97.0% 67.1%
3633084 3352.1.1.25 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PIG-U 0.51 42.0 2.69e-01 98.5% 74.8%
3572474 206.1.1.63 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PIP49_C+PIP49_N 0.50 43.0 2.69e-01 98.5% 51.6%
D3 high residues 168-363
PDB
Domain cluster: rep: IMGVR_UViG_3300010237_000006-3300010237-Ga0136250_1000002017__D103-269