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MG592569.1__AUR94874.1__NVP1199A_08__00008

Bact-Vir

MG592569.1__AUR94874.1__NVP1199A_08__00008

Identity

Accession:
MG592569 ↗
Kingdom:
phage

Quality

76.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-64
PDB
Domain cluster: representative
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 56.0 4.34e-01 90.2% 73.0%
1gn4A02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.68 41.0 3.32e-01 85.2% 31.3%
2lktA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.67 57.0 4.52e-01 95.1% 58.4%
2pn0A02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.64 53.0 4.81e-01 91.8% 89.0%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 5.07e-01 100.0% 76.7%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.63 53.0 3.76e-01 100.0% 48.3%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 5.21e-01 91.8% 95.2%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.61 54.0 4.75e-01 100.0% 95.7%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.61 47.0 3.91e-01 100.0% 46.0%
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.61 53.0 4.66e-01 100.0% 100.0%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.61 54.0 4.57e-01 100.0% 65.7%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 47.0 3.81e-01 85.2% 81.7%
2gfuA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.03e-01 96.7% 51.5%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.60 48.0 4.44e-01 91.8% 84.1%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 49.0 3.77e-01 93.4% 59.3%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.59 50.0 4.21e-01 100.0% 73.9%
3ougA00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.59 52.0 4.37e-01 100.0% 75.5%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.52e-01 91.8% 77.9%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.55e-01 86.9% 76.6%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 49.0 4.35e-01 96.7% 72.8%
5e6tA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.58 49.0 4.36e-01 100.0% 98.9%
3b21A00 3.90.70.140 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.58 50.0 3.56e-01 100.0% 47.9%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.54e-01 91.8% 87.3%
4gklA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 48.0 4.34e-01 96.7% 79.5%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.57 49.0 3.92e-01 100.0% 47.3%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.59e-01 85.2% 81.2%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.70e-01 93.4% 98.4%
1aw8B00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.57 48.0 4.28e-01 96.7% 68.1%
1uasA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 51.0 4.50e-01 100.0% 71.6%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.57 46.0 3.82e-01 90.2% 56.9%
2gsbA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 43.0 3.90e-01 83.6% 98.8%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.56 49.0 3.78e-01 100.0% 90.8%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 47.0 4.51e-01 100.0% 96.0%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.07e-01 100.0% 66.3%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.60e-01 85.2% 69.7%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.56 42.0 4.04e-01 83.6% 100.0%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 49.0 4.53e-01 100.0% 81.2%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 50.0 4.34e-01 100.0% 73.6%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 47.0 4.08e-01 100.0% 76.7%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 45.0 4.12e-01 95.1% 67.8%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.55 48.0 3.72e-01 100.0% 90.1%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.55 37.0 3.88e-01 72.1% 100.0%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.55 40.0 3.63e-01 98.4% 54.4%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.51e-01 100.0% 93.2%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.55 46.0 3.81e-01 100.0% 71.3%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 44.0 3.94e-01 95.1% 74.5%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.55 42.0 3.35e-01 100.0% 39.4%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 48.0 4.55e-01 100.0% 93.2%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 46.0 3.99e-01 98.4% 64.6%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 41.0 3.34e-01 85.2% 40.9%
2bseA00 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.54 45.0 3.91e-01 100.0% 68.2%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 38.0 2.39e-01 77.0% 24.4%
2jqzA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 40.0 3.21e-01 85.2% 96.2%
2mm0A00 2.10.70.110 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.53 42.0 4.23e-01 91.8% 89.1%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.48e-01 90.2% 65.1%
1mxgA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 45.0 3.90e-01 100.0% 95.9%
7plsA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 43.0 3.84e-01 100.0% 77.4%
4npjB01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 39.0 3.14e-01 88.5% 77.9%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.76e-01 95.1% 78.0%
2dmhA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 38.0 3.03e-01 85.2% 82.9%
4j2gA00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.50 40.0 2.91e-01 95.1% 75.2%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3223271 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 53.0 4.78e-01 100.0% 57.6%
4008273 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 61.0 5.88e-01 100.0% 88.6%
3627842 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 4.81e-01 100.0% 62.2%
3999723 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 53.0 3.95e-01 100.0% 36.0%
3577224 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 54.0 4.75e-01 100.0% 62.2%
139950 4.1.1.126 beta barrels › SH3 › SH3 › SH3 › DUF5608 0.64 51.0 5.31e-01 95.1% 96.4%
3301015 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 5.29e-01 91.8% 95.4%
3936496 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 55.0 4.66e-01 100.0% 59.0%
5036621 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 49.0 5.12e-01 93.4% 94.5%
4012899 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 56.0 4.14e-01 100.0% 74.8%
4266069 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.63 53.0 4.49e-01 96.7% 99.0%
5052888 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 55.0 4.37e-01 100.0% 87.2%
4026674 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.62 53.0 4.92e-01 100.0% 88.7%
3851361 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.62 51.0 4.27e-01 91.8% 70.5%
4257969 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 54.0 4.24e-01 100.0% 76.0%
3547084 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 48.0 4.27e-01 100.0% 58.9%
3800494 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 47.0 3.69e-01 86.9% 63.4%
1031172 4.1.1.113 beta barrels › SH3 › SH3 › SH3 › TraI_2B 0.60 52.0 4.95e-01 100.0% 95.8%
4196537 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.60 52.0 4.91e-01 96.7% 92.0%
4029082 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.83e-01 100.0% 100.0%
3830187 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 46.0 4.85e-01 91.8% 94.5%
5056905 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.60 52.0 4.63e-01 100.0% 95.6%
4409482 3158.1.1.2 beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF2777 0.59 52.0 4.89e-01 100.0% 88.0%
3330943 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.59 47.0 4.86e-01 93.4% 96.4%
3259159 284.1.1.5 a+b two layers › FKBP-like › FKBP-like › FKBP-like › Gcd10p 0.59 47.0 3.58e-01 90.2% 98.7%
3294392 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.59 46.0 4.19e-01 93.4% 62.4%
3688068 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.59 50.0 3.85e-01 100.0% 58.7%
4002896 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 48.0 4.27e-01 100.0% 62.2%
3960060 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 46.0 3.43e-01 100.0% 30.8%
3630782 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.58 48.0 3.71e-01 95.1% 51.7%
4287411 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.58 49.0 4.56e-01 100.0% 85.0%
3970039 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.58 50.0 3.88e-01 100.0% 45.0%
4636885 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 49.0 4.64e-01 100.0% 96.0%
3712506 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 49.0 4.48e-01 100.0% 84.7%
3960362 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 46.0 3.87e-01 100.0% 49.6%
5008659 1.1.2.4 beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.57 49.0 3.82e-01 98.4% 93.6%
4384705 12.1.1.52 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GLGE_C 0.57 50.0 4.29e-01 100.0% 75.0%
3768095 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 46.0 4.06e-01 100.0% 58.9%
3883161 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 48.0 4.27e-01 100.0% 65.6%
4403595 12.1.1.52 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GLGE_C 0.57 48.0 4.29e-01 96.7% 76.7%
3609629 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 48.0 4.15e-01 100.0% 61.1%
4527994 12.1.1.52 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GLGE_C 0.56 49.0 4.22e-01 100.0% 70.0%
3883159 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 46.0 4.14e-01 100.0% 63.3%
3261235 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 47.0 4.28e-01 100.0% 68.2%
3629536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.27e-01 100.0% 64.2%
3492016 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.56 45.0 3.96e-01 91.8% 60.0%
3787586 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 46.0 3.91e-01 100.0% 54.3%
5079674 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.55 46.0 4.37e-01 100.0% 94.7%
5081042 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 3.81e-01 90.2% 87.0%
4927036 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.55 46.0 4.18e-01 96.7% 69.4%
5041001 11.1.4.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.54 40.0 3.77e-01 90.2% 62.5%
3547093 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 45.0 4.04e-01 100.0% 64.4%
3833030 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.54 48.0 3.71e-01 100.0% 78.5%
3247746 5.1.4.303 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid 0.54 41.0 2.66e-01 85.2% 83.3%
3814411 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 47.0 3.95e-01 100.0% 61.9%
3971219 11.9.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.54 44.0 3.02e-01 96.7% 68.8%
4934272 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 39.0 3.56e-01 90.2% 55.6%
3602123 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.53 43.0 4.04e-01 96.7% 74.4%
3298989 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 47.0 3.86e-01 100.0% 57.3%
3532309 391.1.1.5 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.53 40.0 4.07e-01 96.7% 83.3%
4420173 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.52 43.0 4.13e-01 98.4% 82.7%
None 0.52 40.0 2.90e-01 86.9% 42.2%
4350552 11.2.1.43 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2+FerI 0.51 39.0 2.49e-01 83.6% 38.8%
3407530 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.51 35.0 2.82e-01 72.1% 77.0%
4647293 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 43.0 3.76e-01 100.0% 73.0%
5069740 11.1.4.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.51 38.0 3.55e-01 90.2% 62.4%
3371596 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 38.0 2.49e-01 85.2% 38.0%
3502042 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.50 39.0 3.10e-01 88.5% 81.4%
3915642 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.58e-01 93.4% 68.4%
5060810 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.50 36.0 3.40e-01 91.8% 60.0%