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MG592573.1__AUR95179.1__NVP1202O_01__00001
Bact-VirMG592573.1__AUR95179.1__NVP1202O_01__00001
Identity
- Accession:
- MG592573 ↗
- Kingdom:
- phage
Quality
81.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Peduoviridae›
Canoevirus›
Vibrio_phage_1.202.O._10N.222.45.E8
TaxID: 1881262
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-41_104-136_224-328
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3og6B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 26.0 | 3.31e-01 | 94.4% | 68.7% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 26.0 | 3.48e-01 | 75.4% | 76.5% |
| 3k6yA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 29.0 | 3.93e-01 | 70.9% | 94.6% |
| 2x8kA03 | 2.60.120.860 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 31.0 | 3.82e-01 | 95.5% | 93.7% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3990321 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 27.0 | 3.47e-01 | 94.4% | 71.0% |
| 1933304 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 25.0 | 3.52e-01 | 71.5% | 78.4% |
| 3502085 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 27.0 | 3.43e-01 | 85.5% | 73.0% |
| 3761841 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.56 | 26.0 | 3.15e-01 | 84.4% | 64.2% |
| 5034828 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 29.0 | 3.56e-01 | 88.3% | 80.9% |
| 4519672 | 10.1.1.26 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C | 0.54 | 35.0 | 3.90e-01 | 92.2% | 83.6% |
| 4963501 | 11.1.1.1049 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7827 | 0.53 | 32.0 | 3.81e-01 | 71.5% | 89.6% |
| 3607434 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.52 | 32.0 | 3.61e-01 | 88.3% | 79.3% |
| 4933922 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.52 | 27.0 | 3.62e-01 | 87.2% | 93.7% |
| 4976638 | 1.1.14.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › PTS system glucitol/sorbitol-specific IIA component-like › DUF371 | 0.51 | 33.0 | 3.65e-01 | 95.0% | 80.0% |
| 3757523 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.51 | 26.0 | 2.86e-01 | 90.5% | 57.9% |
| 3215466 | 11.2.1.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 | 0.50 | 28.0 | 3.39e-01 | 90.5% | 83.5% |
D2
medium
residues 42-60_137-157_194-223
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g88A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 46.0 | 3.24e-01 | 92.9% | 69.5% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4220601 | 327.4.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N | 0.59 | 41.0 | 3.96e-01 | 72.9% | 68.8% |
| 4002369 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.59 | 41.0 | 3.82e-01 | 72.9% | 72.2% |
| 3940556 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 30.0 | 2.66e-01 | 100.0% | 33.6% |
| 4423571 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.53 | 43.0 | 3.08e-01 | 92.9% | 69.4% |
| 3376353 | 2003.1.5.382 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12, Methyltransf_16 | 0.53 | 37.0 | 2.30e-01 | 74.3% | 42.3% |
| 4956189 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.51 | 42.0 | 4.10e-01 | 94.3% | 82.5% |
D3
medium
residues 61-103_158-193
Domain cluster:
representative