←Back to structures

MG592573.1__AUR95180.1__NVP1202O_02__00002

Bact-Vir

MG592573.1__AUR95180.1__NVP1202O_02__00002

Identity

Accession:
MG592573 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Canoevirus› Vibrio_phage_1.202.O._10N.222.45.E8

TaxID: 1881262

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-111
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mmpA00 3.30.160.830 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 33.0 3.65e-01 92.9% 61.0%
1okjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 38.0 3.88e-01 97.0% 66.3%
1a1aB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 40.0 3.99e-01 87.9% 76.5%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.53 43.0 3.49e-01 88.9% 86.5%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 46.0 3.97e-01 100.0% 96.2%
1ry6A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.52 41.0 2.89e-01 85.9% 27.0%
2x0qA01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.50 45.0 4.07e-01 97.0% 89.5%
1uurA04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 35.0 3.23e-01 91.9% 54.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4534466 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.65 48.0 4.96e-01 97.0% 81.1%
3226466 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 39.0 3.59e-01 89.9% 50.8%
4137471 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 37.0 3.64e-01 97.0% 57.3%
3924546 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.58 35.0 3.25e-01 73.7% 46.2%
3587151 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.58 39.0 3.69e-01 85.9% 56.7%
4969332 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.57 35.0 4.15e-01 81.8% 100.0%
3628252 2484.1.1.50 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.56 48.0 3.22e-01 92.9% 91.7%
None — 0.56 44.0 3.89e-01 99.0% 57.9%
4463884 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 36.0 3.49e-01 89.9% 55.7%
4945650 878.1.1.0 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 0.55 44.0 4.44e-01 84.8% 84.0%
4962753 601.23.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.55 38.0 2.75e-01 72.7% 89.3%
3622016 2484.5.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › Peptidase_A17 0.55 42.0 4.21e-01 96.0% 79.0%
4030120 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 2.52e-01 77.8% 19.6%
3365437 192.18.1.0 ↗ alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.54 46.0 3.17e-01 93.9% 91.0%
3514912 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.54 38.0 4.22e-01 96.0% 100.0%
3674460 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.53 41.0 3.18e-01 92.9% 36.4%
3457175 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 44.0 3.30e-01 91.9% 62.3%
158506 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 41.0 3.93e-01 88.9% 71.9%
3305127 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.53 41.0 3.88e-01 100.0% 70.0%
4931472 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 43.0 3.47e-01 90.9% 97.5%
3924545 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.52 35.0 3.38e-01 70.7% 75.0%
3472609 220.1.1.35 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH 0.52 43.0 3.64e-01 89.9% 82.4%
3927287 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.51 34.0 3.39e-01 70.7% 63.8%
4027577 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 35.0 3.27e-01 92.9% 56.0%
None — 0.51 42.0 2.98e-01 93.9% 89.0%
3798461 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 31.0 2.98e-01 82.8% 50.0%
D2 high residues 126-203
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 44.0 3.95e-01 73.1% 70.6%
3hq2B00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.58 49.0 2.96e-01 91.0% 73.2%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 48.0 3.19e-01 97.4% 35.6%
2wl1A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.54 39.0 3.02e-01 78.2% 98.4%
1pkfA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 39.0 2.46e-01 76.9% 21.3%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.34e-01 82.1% 82.9%
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 41.0 3.38e-01 88.5% 88.2%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 40.0 2.79e-01 87.2% 49.8%
7v7yA01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.50 40.0 2.82e-01 92.3% 60.5%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3628286 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.57 39.0 3.34e-01 70.5% 78.5%
146948 3170.1.1.1 ↗ a+b two layers › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 › DUF4144 0.56 44.0 3.93e-01 87.2% 76.3%
4221106 2006.1.1.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.54 42.0 3.27e-01 88.5% 44.2%
3166171 3355.1.1.16 ↗ alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DcuC 0.53 40.0 2.49e-01 83.3% 68.2%
4220848 2484.1.1.103 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tab2-like_N 0.53 44.0 3.11e-01 91.0% 34.9%
3280139 211.1.1.24 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Ble-like_N 0.53 26.0 2.86e-01 80.8% 55.0%
3378826 7523.1.1.10 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › HisG 0.51 36.0 3.06e-01 88.5% 42.9%
5678 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.50 27.0 2.87e-01 84.6% 56.2%
D3 high residues 221-337
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6ro0B01 3.10.40.10 Alpha Beta › Roll › Pertussis Toxin; Chain B, domain 1 › Aerolysin/Pertussis toxin (APT), N-terminal domain 0.58 30.0 3.35e-01 96.6% 62.8%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 29.0 3.92e-01 94.9% 100.0%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 23.0 3.08e-01 73.5% 80.7%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4290609 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.68 27.0 3.71e-01 81.2% 71.7%
4323586 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.60 29.0 3.67e-01 80.3% 77.1%
4934441 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.58 30.0 3.81e-01 75.2% 87.5%
4254219 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 31.0 3.89e-01 77.8% 95.4%
4596531 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.55 32.0 4.12e-01 96.6% 98.6%
4041935 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.55 31.0 4.05e-01 94.0% 100.0%