←Back to structures

MG592573.1__AUR95182.1__NVP1202O_04__00004

Bact-Vir

MG592573.1__AUR95182.1__NVP1202O_04__00004

Identity

Accession:
MG592573 ↗
Kingdom:
phage

Quality

80.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Canoevirus› Vibrio_phage_1.202.O._10N.222.45.E8

TaxID: 1881262

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-53_102-118_137-209
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dapA02 3.40.1350.60 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 37.0 3.71e-01 72.0% 97.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3219594 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 30.0 3.07e-01 86.7% 53.8%
5021698 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.53 38.0 3.11e-01 74.1% 47.2%
4944838 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.52 37.0 3.25e-01 96.5% 48.4%
D2 medium residues 54-101_119-136
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v8qB00 6.20.250.60 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.66 30.0 2.95e-01 72.7% 38.4%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.57 30.0 3.15e-01 100.0% 56.7%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 32.0 2.99e-01 72.7% 48.1%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 48.0 3.69e-01 100.0% 87.9%
2jugA01 1.10.10.1830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain 0.55 32.0 3.48e-01 92.4% 69.1%
1vioA03 3.30.70.1560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif 0.54 39.0 3.72e-01 97.0% 63.4%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.54 40.0 2.81e-01 81.8% 62.8%
1kskA02 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.54 39.0 2.99e-01 97.0% 31.1%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 33.0 2.81e-01 77.3% 38.5%
3lnbA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.52 36.0 2.49e-01 72.7% 72.6%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.52 38.0 3.66e-01 100.0% 67.9%
4csqA00 2.30.29.190 Mainly Beta › Roll › PH-domain like › 0.52 33.0 2.72e-01 72.7% 38.1%
4kdyB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 35.0 3.34e-01 71.2% 81.2%
1pjqA02 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.51 29.0 3.64e-01 90.9% 100.0%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 44.0 3.09e-01 100.0% 82.4%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.51 39.0 2.38e-01 86.4% 47.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4636695 304.36.1.1 ↗ a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.63 41.0 4.13e-01 100.0% 64.7%
4959822 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.63 54.0 3.27e-01 100.0% 80.4%
3605369 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 29.0 3.18e-01 72.7% 50.9%
4930594 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 35.0 3.43e-01 97.0% 54.7%
3838076 2008.1.1.31 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC 0.53 41.0 3.11e-01 89.4% 55.7%
4457710 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 35.0 2.85e-01 80.3% 37.5%
3712081 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 32.0 2.71e-01 77.3% 38.2%
3581269 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.52 42.0 3.29e-01 98.5% 89.4%
3250474 109.1.1.7 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_3 0.51 40.0 2.99e-01 87.9% 54.1%
5060428 1075.1.1.3 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.51 42.0 2.84e-01 93.9% 58.1%
5059005 5068.1.1.0 ↗ alpha bundles › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 0.51 35.0 2.63e-01 100.0% 27.4%
3550136 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 33.0 2.69e-01 80.3% 38.3%
3239600 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.51 40.0 4.00e-01 97.0% 85.7%
3788479 804.1.1.3 ↗ a+b four layers › Hypothetical protein YwqG › Hypothetical protein YwqG › Hypothetical protein YwqG › PDCD2_C, PF30657 0.50 37.0 2.54e-01 77.3% 27.2%
4681706 1046.1.1.1 ↗ alpha bundles › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Peptidase_A8 0.50 42.0 3.24e-01 97.0% 60.4%