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MG592575.1__AUR95300.1__NVP1205O_25__00025

Bact-Vir

MG592575.1__AUR95300.1__NVP1205O_25__00025

Identity

Accession:
MG592575 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.205.O._10N.222.51.A7

TaxID: 1881451

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 68-146
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4usoA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.66 46.0 3.93e-01 74.7% 100.0%
2hdeA01 3.10.20.550 Alpha Beta › Roll › Ubiquitin-like (UB roll) › ASAP complex, SAP18 subunit 0.52 42.0 3.73e-01 92.4% 80.5%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.69e-01 74.7% 97.4%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.52 41.0 3.90e-01 91.1% 88.0%
4jfhE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.46e-01 84.8% 87.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3236717 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 3.42e-01 81.0% 87.3%
D2 medium residues 5-67_151-163
PDB
Domain cluster: rep: MW677529.1__QXN72709.1__RCZAHN_100__00100__D97-150
D3 medium residues 186-223
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d00A02 3.30.60.80 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.63 41.0 4.32e-01 81.6% 83.3%
6xi7B02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.62 46.0 4.61e-01 84.2% 84.6%
2gviA03 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.62 47.0 4.87e-01 84.2% 94.1%
4n4fA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 45.0 4.46e-01 78.9% 85.0%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 49.0 3.46e-01 92.1% 34.1%
2ecjA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 48.0 4.32e-01 97.4% 77.6%
2w0tA00 3.30.60.160 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.59 48.0 4.70e-01 97.4% 90.7%
5sviB00 3.30.40.100 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.58 39.0 3.67e-01 73.7% 73.6%
1bccD02 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.57 38.0 2.48e-01 71.1% 23.5%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.57 43.0 2.82e-01 86.8% 19.3%
2drpA02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.57 38.0 4.03e-01 81.6% 93.1%
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.56 42.0 4.09e-01 81.6% 79.1%
2apoB00 2.20.28.40 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › H/ACA ribonucleoprotein complex, subunit Nop10 0.56 37.0 3.35e-01 89.5% 41.8%
3p2aA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.52 40.0 4.07e-01 97.4% 94.4%
1rfhA01 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.51 36.0 3.57e-01 81.6% 87.8%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004690 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 56.0 5.80e-01 84.2% 91.4%
5004198 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.73 55.0 5.67e-01 84.2% 91.4%
3337279 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 55.0 5.72e-01 84.2% 91.4%
4201209 375.6.1.1 ↗ few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › FlhC 0.70 49.0 5.16e-01 78.9% 96.7%
4940877 377.1.1.130 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf_Tbcl_2 0.70 51.0 5.21e-01 81.6% 91.4%
5073000 4123.1.1.0 ↗ few secondary structure elements › E7 C-terminal domain-like › E7 C-terminal domain-like › E7 C-terminal domain-like 0.69 56.0 5.53e-01 92.1% 95.0%
5050300 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 48.0 4.95e-01 81.6% 94.3%
3425436 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 48.0 4.82e-01 81.6% 92.5%
3935895 377.9.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.66 56.0 5.59e-01 100.0% 97.5%
4940040 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.66 49.0 4.65e-01 81.6% 73.3%
3251948 375.1.3.2 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP 0.65 47.0 4.15e-01 94.7% 51.7%
3700937 377.9.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.63 50.0 5.01e-01 100.0% 92.5%
3537307 377.1.1.34 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › FAM76 0.63 49.0 3.58e-01 92.1% 30.9%
3855126 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.61 45.0 4.60e-01 92.1% 94.3%
3809619 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.60 51.0 4.62e-01 100.0% 81.8%
3392574 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 46.0 4.43e-01 92.1% 84.4%
3928404 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 44.0 4.43e-01 84.2% 92.5%
3493053 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.59 42.0 4.22e-01 84.2% 90.0%
5060529 375.1.3.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.57 43.0 3.54e-01 89.5% 44.3%
5034126 375.1.3.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.57 41.0 3.68e-01 97.4% 51.7%
3550281 376.1.1.66 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 0.57 46.0 3.87e-01 100.0% 90.7%
4959767 375.1.3.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.56 40.0 3.56e-01 86.8% 50.0%
3807750 186.2.1.1 ↗ alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box 0.55 41.0 2.90e-01 84.2% 40.0%
3681026 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.55 45.0 2.82e-01 97.4% 62.2%
3396844 2006.1.6.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Ku_N 0.54 41.0 2.60e-01 86.8% 31.9%
2067093 186.2.1.1 ↗ alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box 0.53 40.0 2.78e-01 84.2% 36.5%
3165333 375.1.1.14 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L32p 0.51 34.0 3.52e-01 89.5% 74.3%