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MG592578.1__AUR95512.1__NVP1208B_24__00024

Bact-Vir

MG592578.1__AUR95512.1__NVP1208B_24__00024

Identity

Accession:
MG592578 ↗
Kingdom:
phage

Quality

90.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Vibrio_phage_1.208.B._10N.222.52.A7

TaxID: 1881437

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 121-151
PDB
Domain cluster: rep: OQ594354.1__WEV89201.1__X__00014__D43-72
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z73B01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 43.0 2.59e-01 96.8% 31.2%
2m85A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 38.0 3.21e-01 87.1% 44.6%
2iz4A02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 35.0 3.43e-01 87.1% 61.9%
1qhdA01 2.60.120.170 Mainly Beta › Sandwich › Jelly Rolls › 0.51 38.0 2.36e-01 77.4% 45.3%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 36.0 2.26e-01 96.8% 34.8%
4mnkA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 35.0 3.01e-01 77.4% 41.5%
6aqgD02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 35.0 2.06e-01 77.4% 7.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3766109 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 40.0 3.64e-01 74.2% 50.0%
3933306 5001.1.1.44 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.56 41.0 2.51e-01 90.3% 40.4%
3889954 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.56 39.0 3.54e-01 77.4% 62.0%
4532002 387.2.1.0 ↗ few secondary structure elements › omega toxin-like 0.56 43.0 4.19e-01 100.0% 100.0%
3291003 2003.1.2.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 41.0 2.65e-01 96.8% 16.4%
3602749 205.1.1.35 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4+Fer4_7 0.54 40.0 3.18e-01 87.1% 40.0%
3949461 604.2.1.1 ↗ alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C 0.54 40.0 3.03e-01 100.0% 79.1%
3988582 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.53 38.0 2.75e-01 100.0% 44.8%
3211001 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.53 38.0 2.96e-01 100.0% 31.1%
4183108 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.52 42.0 2.75e-01 100.0% 74.4%
4544763 4212.1.1.1 ↗ beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N 0.52 40.0 2.83e-01 100.0% 34.6%
3502807 389.1.1.95 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_Mua-3 0.52 36.0 3.19e-01 100.0% 46.0%
3443021 207.1.1.55 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.50 35.0 2.05e-01 90.3% 13.3%
None — 0.50 37.0 2.28e-01 96.8% 33.2%