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MG592578.1__AUR95542.1__NVP1208B_54__00054

Bact-Vir

MG592578.1__AUR95542.1__NVP1208B_54__00054

Identity

Accession:
MG592578 ↗
Kingdom:
phage

Quality

71.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 25-112_188-232
PDB
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.64 41.0 4.90e-01 92.5% 100.0%
2bj3D02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.63 39.0 4.72e-01 92.5% 100.0%
2n8lA00 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.62 55.0 4.85e-01 95.5% 85.3%
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.59 45.0 4.54e-01 97.0% 78.8%
3l81A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.59 37.0 4.09e-01 81.2% 77.3%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.59 41.0 3.96e-01 71.4% 90.1%
4llfD02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 36.0 3.79e-01 72.9% 66.7%
4f67A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 4.36e-01 73.7% 87.7%
1v9kA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.57 42.0 3.59e-01 78.2% 74.4%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 4.27e-01 70.7% 87.7%
2mklC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 37.0 4.15e-01 94.0% 84.8%
2xidA04 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.56 44.0 4.75e-01 97.0% 96.5%
5h80B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 42.0 3.42e-01 79.7% 82.9%
7vcnA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.55 40.0 4.44e-01 93.2% 97.1%
6h8oA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.55 33.0 3.77e-01 74.4% 82.1%
1b3tA00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.54 39.0 3.81e-01 74.4% 76.9%
1t0tV02 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.54 43.0 4.68e-01 94.7% 100.0%
4b96A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.54 40.0 3.86e-01 77.4% 84.1%
1o0vA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 35.0 3.87e-01 86.5% 80.9%
3k7mX02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.53 38.0 3.33e-01 74.4% 57.8%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 45.0 4.18e-01 91.7% 88.0%
2ahoB03 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.53 35.0 4.13e-01 75.2% 100.0%
1p5dX04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.53 36.0 4.21e-01 80.5% 100.0%
1a66A00 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.52 40.0 3.67e-01 82.0% 87.1%
1gx5A03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 36.0 3.81e-01 75.2% 79.5%
3w9iD03 3.30.70.1320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like 0.51 38.0 4.19e-01 82.7% 99.0%
2y7lA02 2.60.40.2430 Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain 0.51 39.0 3.80e-01 82.0% 88.1%
2dnmA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 35.0 3.82e-01 94.7% 90.3%
2ednA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.72e-01 91.7% 80.5%
2cq4A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 33.0 3.77e-01 91.0% 92.8%
4q9cA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 34.0 3.74e-01 94.0% 86.7%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.50 35.0 3.14e-01 72.9% 94.2%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3192908 321.1.1.10 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Amidoligase_2 0.87 82.0 5.85e-01 98.5% 89.6%
3194430 321.1.1.10 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Amidoligase_2 0.86 79.0 5.63e-01 96.2% 87.5%
4778785 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 41.0 4.98e-01 70.7% 100.0%
4779977 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 40.0 4.88e-01 70.7% 100.0%
4996341 304.8.1.96 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26798 0.63 37.0 4.65e-01 75.9% 97.5%
4997522 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.63 38.0 4.76e-01 71.4% 100.0%
4938886 304.8.1.96 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26798 0.62 39.0 4.76e-01 83.5% 98.8%
3840416 4323.1.1.1 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.62 39.0 4.56e-01 70.7% 93.3%
3394912 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 38.0 4.58e-01 71.4% 96.5%
3655848 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.61 42.0 4.82e-01 73.7% 97.9%
4998046 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.61 43.0 4.34e-01 82.7% 72.6%
5007296 304.8.1.96 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26798 0.60 40.0 4.71e-01 85.7% 98.9%
3704224 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 35.0 4.11e-01 82.7% 81.1%
3783394 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.60 41.0 4.36e-01 98.5% 78.3%
3328167 11.1.1.635 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_N_CWD1 0.60 40.0 4.15e-01 81.2% 72.0%
5057293 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 4.17e-01 82.0% 70.8%
4030243 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.60 39.0 4.29e-01 70.7% 81.9%
3374804 7104.1.1.1 beta sandwiches › putative carbohydrate-binding module of GH2 › putative carbohydrate-binding module of GH2 › putative carbohydrate-binding module of GH2 › GUB_WAK_bind 0.60 39.0 3.41e-01 97.0% 42.4%
3597235 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 43.0 3.83e-01 75.2% 88.6%
3423206 304.59.1.0 a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like 0.58 39.0 4.62e-01 70.7% 100.0%
3716480 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.57 48.0 4.55e-01 90.2% 88.7%
4011808 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.57 44.0 4.63e-01 81.2% 91.7%
4385554 11.1.5.28 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF1775 0.57 42.0 4.33e-01 81.2% 79.2%
3854764 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.56 43.0 2.97e-01 80.5% 85.1%
3367433 244.1.1.26 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GUB_WAK_bind 0.56 39.0 3.59e-01 94.7% 54.7%
5058891 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.56 36.0 4.34e-01 75.9% 100.0%
3343188 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.56 35.0 3.51e-01 88.0% 58.6%
3611768 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 40.0 4.18e-01 82.0% 80.0%
4945789 304.48.1.110 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS_FLD 0.56 41.0 3.94e-01 78.2% 85.0%
4961551 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 37.0 3.86e-01 82.0% 73.3%
5029636 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.56 40.0 4.54e-01 82.7% 100.0%
4049544 304.48.1.32 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.55 44.0 4.08e-01 84.2% 78.2%
3917161 2484.1.1.153 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1744 0.55 43.0 3.14e-01 82.7% 93.2%
None 0.55 39.0 2.88e-01 74.4% 74.1%
4668207 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 4.02e-01 82.0% 76.2%
3435159 304.4.1.55 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › GUB_WAK_bind 0.54 37.0 3.49e-01 93.2% 57.9%
3497218 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.79e-01 82.0% 71.0%
5047593 304.48.1.32 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.52 40.0 3.87e-01 82.7% 84.5%
3852395 11.1.1.297 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 0.52 38.0 3.73e-01 81.2% 69.3%
3497745 309.1.1.11 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › PqqF-like_C_4 0.51 43.0 3.40e-01 91.0% 91.8%
3814507 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.50 37.0 3.80e-01 84.2% 79.2%
D2 medium residues 113-187
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 43.0 4.34e-01 70.7% 100.0%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 44.0 4.10e-01 74.7% 57.6%
5z7qA00 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.52 44.0 3.46e-01 100.0% 52.3%
1k87A02 1.10.2060.10 Mainly Alpha › Orthogonal Bundle › PutA proline dehydrogenase (PRODH), domain 2 › PutA proline dehydrogenase (PRODH), domain 2 0.51 39.0 3.56e-01 86.7% 81.7%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 41.0 3.43e-01 97.3% 68.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3616706 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.56 39.0 3.30e-01 73.3% 85.2%
4442170 11.1.1.154 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgE_dom_N_S 0.56 43.0 3.31e-01 100.0% 33.8%
3491715 632.6.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit 0.55 45.0 4.47e-01 100.0% 87.5%
4034211 632.19.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.54 44.0 3.88e-01 100.0% 57.6%
3587779 138.1.1.0 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.53 40.0 4.00e-01 97.3% 78.8%
3830264 632.3.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.52 42.0 3.75e-01 97.3% 61.5%
D3 medium residues 233-305
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1is8A01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.69 49.0 5.25e-01 75.3% 100.0%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.56 46.0 3.97e-01 89.0% 59.5%
1fouA01 1.10.246.30 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.56 46.0 4.59e-01 97.3% 90.5%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.56 41.0 3.83e-01 95.9% 61.9%
3kh1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 45.0 3.43e-01 98.6% 47.2%
3ukmA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 44.0 3.19e-01 100.0% 78.6%
2ntxA01 1.20.58.2010 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 0.52 41.0 2.99e-01 84.9% 89.5%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.51 38.0 4.02e-01 91.8% 92.2%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.50 42.0 3.73e-01 93.2% 81.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5011535 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.71 52.0 3.60e-01 76.7% 78.7%
3619615 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 52.0 4.72e-01 94.5% 62.0%
3674718 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 54.0 3.45e-01 98.6% 19.5%
3635814 5069.1.3.60 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › OST3_OST6 0.63 53.0 4.79e-01 98.6% 94.3%