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MG592583.1__AUR95804.1__NVP1213O_28__00028

Bact-Vir

MG592583.1__AUR95804.1__NVP1213O_28__00028

Identity

Accession:
MG592583 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-44_107-135
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 32.0 2.85e-01 91.8% 34.0%
2zxiA03 1.10.10.1800 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA 0.60 43.0 3.95e-01 75.3% 59.8%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.56 31.0 2.92e-01 86.3% 41.8%
4ijaA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 41.0 3.29e-01 82.2% 88.0%
6oyfA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 39.0 3.14e-01 79.5% 71.2%
4c4aA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.52 33.0 2.50e-01 75.3% 24.7%
1ff9A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 42.0 3.18e-01 89.0% 50.6%
5t3dA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.50 40.0 3.11e-01 89.0% 73.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3935332 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.72 34.0 2.78e-01 91.8% 26.2%
3406351 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.69 33.0 2.84e-01 91.8% 30.9%
3228583 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.63 32.0 2.70e-01 91.8% 30.4%
4978628 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.61 44.0 2.59e-01 76.7% 60.2%
4020201 3186.1.1.0 a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK 0.61 50.0 3.72e-01 89.0% 52.2%
1145896 3265.1.1.1 alpha arrays › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › GIDA_C_1st 0.60 43.0 4.10e-01 75.3% 66.7%
3575906 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 45.0 3.54e-01 79.5% 75.5%
3591537 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 29.0 2.83e-01 91.8% 43.8%
5062171 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 3.58e-01 87.7% 46.7%
5003454 1075.3.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.56 39.0 2.67e-01 74.0% 73.3%
3742432 1016.1.1.1 alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK 0.55 42.0 3.60e-01 84.9% 92.8%
3859550 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.55 29.0 2.46e-01 91.8% 29.2%
5044803 2498.1.1.6 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 0.55 43.0 2.55e-01 84.9% 59.2%
5062758 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.13e-01 94.5% 34.4%
4984126 3396.1.1.0 extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A 0.53 34.0 3.56e-01 76.7% 72.3%
3196591 11.1.1.871 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26282 0.53 32.0 2.42e-01 76.7% 25.9%
4979956 3236.1.1.5 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_antiport_1 0.52 46.0 2.89e-01 100.0% 66.5%
3623035 2004.5.1.3 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN 0.52 41.0 2.90e-01 89.0% 63.6%
4469496 3236.1.1.5 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_antiport_1 0.51 45.0 2.90e-01 100.0% 68.3%
4521030 3236.1.1.5 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_antiport_1 0.51 42.0 2.78e-01 98.6% 70.0%
3268814 298.1.1.15 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Sacchrp_dh_C 0.51 40.0 2.83e-01 87.7% 82.0%
3994209 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.50 37.0 2.50e-01 80.8% 69.5%
5034747 2003.1.1.386 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_C 0.50 39.0 2.47e-01 87.7% 42.3%
D2 medium residues 45-106
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wcrB00 3.10.129.140 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein 0.69 57.0 4.36e-01 91.9% 59.6%
4pswA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 52.0 5.46e-01 88.7% 100.0%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 52.0 4.56e-01 91.9% 74.5%
4pjjA04 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.66 45.0 3.57e-01 71.0% 62.4%
7ar7E01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.64 44.0 4.47e-01 75.8% 71.4%
2fe1A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.64 48.0 3.74e-01 79.0% 51.5%
3ff5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 4.90e-01 82.3% 88.9%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 4.36e-01 87.1% 63.8%
1br2A03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.63 48.0 4.12e-01 80.6% 90.5%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.61 52.0 3.49e-01 100.0% 28.6%
5ilnA01 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.61 43.0 3.02e-01 100.0% 24.0%
3e7pA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 40.0 2.72e-01 71.0% 84.6%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.59 46.0 4.41e-01 85.5% 89.2%
1dw9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 49.0 4.36e-01 90.3% 83.9%
1j3eA00 1.20.1380.10 Mainly Alpha › Up-down Bundle › Replication modulator SeqA, C-terminal DNA-binding domain › Replication modulator SeqA, C-terminal DNA-binding domain 0.58 43.0 3.57e-01 80.6% 98.3%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 3.48e-01 88.7% 43.6%
3hwrA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 46.0 3.81e-01 96.8% 57.4%
4cvnA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 44.0 3.24e-01 87.1% 67.0%
3zheB02 1.20.190.60 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 0.56 49.0 3.53e-01 100.0% 34.3%
3oo6A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 45.0 3.26e-01 96.8% 80.1%
2xheA04 1.25.40.60 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 47.0 3.89e-01 98.4% 51.7%
1np7A02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 48.0 3.92e-01 100.0% 52.9%
1jakA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 43.0 2.79e-01 90.3% 17.1%
1f0jA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.55 46.0 2.91e-01 95.2% 68.4%
2yukA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.51 40.0 3.54e-01 85.5% 71.1%
4byfC01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.51 41.0 3.71e-01 96.8% 65.2%
3aekA03 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.51 40.0 3.32e-01 91.9% 81.3%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3715120 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.76 44.0 4.49e-01 88.7% 60.0%
5053307 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 61.0 6.20e-01 91.9% 100.0%
3341845 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.73 49.0 4.98e-01 95.2% 71.7%
3809183 109.3.1.193 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF27629 0.68 59.0 4.45e-01 98.4% 78.7%
3705273 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.68 52.0 3.99e-01 83.9% 39.3%
5060926 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.68 51.0 3.43e-01 80.6% 39.1%
5050629 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.67 49.0 3.23e-01 80.6% 22.4%
4365970 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.66 56.0 4.74e-01 100.0% 62.7%
3711095 3075.1.1.0 a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA 0.66 53.0 5.01e-01 93.5% 74.7%
None 0.66 47.0 2.80e-01 96.8% 10.7%
3852914 173.1.1.2 alpha arrays › Uteroglobin-like › Uteroglobin-like › Uteroglobin-like › Feld-I_B 0.65 48.0 4.25e-01 88.7% 53.3%
3395281 109.4.1.342 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SBF2 0.65 55.0 3.83e-01 95.2% 28.1%
3577067 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.65 55.0 4.37e-01 96.8% 49.2%
3386119 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.65 60.0 4.03e-01 100.0% 33.2%
3240039 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.65 57.0 5.41e-01 100.0% 88.0%
5044421 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.64 52.0 4.84e-01 91.9% 85.0%
3171699 101.1.1.133 alpha arrays › HTH › HTH › Three-helical HTH › Vhr1 0.64 54.0 4.74e-01 100.0% 82.0%
3626320 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.64 55.0 4.64e-01 100.0% 57.3%
3906253 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.63 54.0 4.39e-01 98.4% 50.0%
3518991 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.63 54.0 5.08e-01 96.8% 100.0%
3220252 101.1.1.123 alpha arrays › HTH › HTH › Three-helical HTH › MCRS_N 0.63 51.0 4.87e-01 93.5% 93.3%
4012507 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.63 52.0 3.71e-01 93.5% 81.6%
4982137 4033.1.1.1 alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.62 53.0 5.00e-01 96.8% 84.0%
3494026 109.4.1.70 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.62 49.0 3.86e-01 93.5% 40.0%
4480624 601.50.1.0 alpha bundles › Four-helical up-and-down bundle › Flagellar cap protein FliD helical bundle domain › Flagellar cap protein FliD helical bundle domain 0.62 44.0 3.33e-01 77.4% 32.9%
3853979 101.1.2.573 alpha arrays › HTH › HTH › winged helix domain › NPHP3_hel 0.61 53.0 4.11e-01 95.2% 49.2%
3913925 570.1.1.1 alpha arrays › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › SecA_PP_bind 0.61 50.0 4.13e-01 98.4% 64.0%
3959854 3997.1.1.0 alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit 0.61 53.0 3.78e-01 100.0% 44.2%
3711217 101.7.1.0 alpha arrays › HTH › DEK-C › DEK-C 0.61 48.0 4.76e-01 91.9% 96.9%
3929725 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.61 51.0 4.55e-01 100.0% 96.8%
4947850 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 3.89e-01 83.9% 60.0%
3979567 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.59 48.0 4.26e-01 90.3% 66.7%
3925690 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.59 49.0 4.68e-01 96.8% 85.3%
3986875 4254.1.1.1 alpha arrays › YoaC-like › YoaC-like › YoaC-like › DUF1889 0.58 44.0 4.27e-01 88.7% 72.6%
3594658 210.1.3.0 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.57 44.0 3.16e-01 90.3% 51.9%
3720488 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.57 41.0 3.25e-01 80.6% 36.9%
4000128 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 43.0 3.88e-01 87.1% 60.0%
4955372 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 3.85e-01 93.5% 80.9%
4567807 397.7.1.6 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › PF29718 0.55 45.0 4.51e-01 90.3% 95.4%
3188597 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.55 47.0 4.14e-01 93.5% 85.6%
3621527 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.55 41.0 3.81e-01 80.6% 81.2%
3272887 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 49.0 3.82e-01 100.0% 61.5%
4341190 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.55 41.0 3.11e-01 82.3% 39.4%
4968451 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 46.0 3.62e-01 95.2% 93.8%
3557762 103.1.1.92 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DNA_pol_delta_4 0.52 38.0 4.10e-01 79.0% 100.0%